Cla006315 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla006315 T006429_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.793 0.920
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.793 0.920
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.790 0.900
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.790 0.900
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.790 0.900
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.790 0.900
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.768 0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.768 0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.768 0.880
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.732 0.800
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.732 0.800
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.719 0.760
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.719 0.760
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.719 0.760
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.719 0.760
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.719 0.760
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.719 0.760
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.704 0.920
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.704 0.920
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.690 0.720
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006315 AP2 52 103

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.834
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.832
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.829
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.829
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.826
PK23332.1 Cannabis sativa PK23332.1 I 0.826
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.825
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.825
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.825
mgf026642m Mimulus guttatus mgf026642m I 0.819
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.819
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.813
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.804
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.804
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.803
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.802
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.802
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.802
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.802
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.802
30147.m014313 Ricinus communis 30147.m014313 I 0.799
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.799
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.797
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.796
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.796
Cla002362 Citrullus lanatus Cla002362 I 0.794
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.793
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.793
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.793
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.793
Bo9g104770 Brassica oleracea Bo9g104770 I 0.793
Bra028290 Brassica rapa Bra028290 I 0.793
DREB1D Arabidopsis thaliana AT5G51990 D 0.793
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.793
DREB1A Arabidopsis thaliana AT4G25480 D 0.790
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.790
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.789
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.786
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.785
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.785
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.784
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.783
mgf017136m Mimulus guttatus mgf017136m I 0.780
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.780
MDP0000198054 Malus domestica MDP0000198054 I 0.779
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.777
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.777
Pm023775 Prunus mume Pm023775 I 0.777
MDP0000154764 Malus domestica MDP0000154764 I 0.777
Cla011674 Citrullus lanatus Cla011674 I 0.777
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.776
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.774
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.773
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.772
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.772
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.772
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.772
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.772
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.771
DREB1C Arabidopsis thaliana AT4G25470 D 0.768
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.766
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.766
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.763
mgf019061m Mimulus guttatus mgf019061m I 0.763
Pm023769 Prunus mume Pm023769 I 0.762
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.762
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.761
TCM_016175 Theobroma cacao TCM_016175 I 0.761
Pm023772 Prunus mume Pm023772 I 0.754
30190.m011120 Ricinus communis 30190.m011120 I 0.754
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.753
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.753
60638.m00016 Ricinus communis 60638.m00016 I 0.750
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.749
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.745
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.745
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.745
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.744
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.744
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.744
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.744
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.744
30190.m011119 Ricinus communis 30190.m011119 I 0.743
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.742
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.742
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.740
mgf026339m Mimulus guttatus mgf026339m I 0.739
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.738
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.738
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.737
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.737
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.737
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.736
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.736
Pm019386 Prunus mume Pm019386 I 0.733
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.732
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.732
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.732
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.732
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.732
DREB1G Oryza indica BGIOSGA008804 I 0.732
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.732
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.732
OBART02G27760 Oryza barthii OBART02G27760 I 0.732
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.732
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.732
DREB1G Oryza sativa OS02G0677300 D 0.732
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.732
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.732
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.730
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.729
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.728
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.727
Ca_04504 Cicer arietinum Ca_04504 I 0.726
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.725
Bra016763 Brassica rapa Bra016763 I 0.725
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.725
Bo01335s010 Brassica oleracea Bo01335s010 I 0.725
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.724
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.723
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.723
Bra026963 Brassica rapa Bra026963 I 0.722
Bo8g108050 Brassica oleracea Bo8g108050 I 0.722
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.722
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.722
Si018262m.g Setaria italica Si018262m.g I 0.722
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.722
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.722
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.722
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.722
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.721
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.721
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.720
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.720
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.719
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.719
DREB1F Arabidopsis thaliana AT1G12610 D 0.719
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.718
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.716
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.715
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.715
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.715
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.715
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.715
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.715
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.714
Ca_18948 Cicer arietinum Ca_18948 I 0.713
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.713
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.713
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.711
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.711
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.709
mgf018934m Mimulus guttatus mgf018934m I 0.709
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.709
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.709
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.709
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.709
mgf016974m Mimulus guttatus mgf016974m I 0.709
mgf022408m Mimulus guttatus mgf022408m I 0.709
mgf018631m Mimulus guttatus mgf018631m I 0.709
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.708
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.704
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.704
Bo7g110320 Brassica oleracea Bo7g110320 I 0.704
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.704
Bra019162 Brassica rapa Bra019162 I 0.704
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.701
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.701
Bra022770 Brassica rapa Bra022770 I 0.701
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.701
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.699
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.698
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.698
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.697
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.696
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.695
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.694
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.694
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.692
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.692
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.691
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.690
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.690
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.690
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.690
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.689
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.688
Ca_08732 Cicer arietinum Ca_08732 I 0.686
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.686
DREB1E Oryza indica BGIOSGA016950 I 0.685
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.685
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.685
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.685
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.685
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.685
DREB1E Oryza sativa OS04G0572400 D 0.685
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.685
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.685
OBART04G22220 Oryza barthii OBART04G22220 I 0.685
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.685
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.684
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.684
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.683
Bo5g016750 Brassica oleracea Bo5g016750 I 0.682
Bra019777 Brassica rapa Bra019777 I 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.681
mgf017477m Mimulus guttatus mgf017477m N 0.680
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.680
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.680
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.680
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.678