Cla006713 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla006713 T006431_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.781 0.918
Q8H769_WHEAT
M09721_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.726 0.837
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.720 0.816
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.695 0.816
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.695 0.816
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.695 0.816
Q1ESI9_MAIZE
M09714_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB2A_02
0.690 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006713 AP2 80 131

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002292 Ricinus communis 29729.m002292 I 0.758
30170.m014115 Ricinus communis 30170.m014115 I 0.690
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.715
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.715
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.707
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.736
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.725
Bo2g006960 Brassica oleracea Bo2g006960 I 0.690
Bo2g016490 Brassica oleracea Bo2g016490 I 0.700
Bo2g083920 Brassica oleracea Bo2g083920 I 0.696
Bo4g190040 Brassica oleracea Bo4g190040 I 0.731
Bo6g086320 Brassica oleracea Bo6g086320 I 0.695
Bo6g119660 Brassica oleracea Bo6g119660 I 0.695
Bo9g155940 Brassica oleracea Bo9g155940 I 0.720
Bo9g177130 Brassica oleracea Bo9g177130 I 0.700
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.688
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.688
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.677
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.720
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.695
Bra002159 Brassica rapa Bra002159 I 0.720
Bra003752 Brassica rapa Bra003752 I 0.695
Bra005852 Brassica rapa Bra005852 I 0.683
Bra008200 Brassica rapa Bra008200 I 0.696
Bra015840 Brassica rapa Bra015840 I 0.695
Bra017011 Brassica rapa Bra017011 I 0.731
Bra023674 Brassica rapa Bra023674 I 0.700
Bra028759 Brassica rapa Bra028759 I 0.690
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.730
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.715
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.695
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.682
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.715
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.682
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.771
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.690
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.689
Ca_10770 Cicer arietinum Ca_10770 I 0.694
Ca_12446 Cicer arietinum Ca_12446 I 0.706
Ca_22585 Cicer arietinum Ca_22585 I 0.694
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.690
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.742
Cla001755 Citrullus lanatus Cla001755 I 0.721
Cla012194 Citrullus lanatus Cla012194 I 0.692
Cla021113 Citrullus lanatus Cla021113 I 0.693
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.721
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.677
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.805
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.694
DREB2A Oryza sativa OS01G0165000 I 0.725
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.697
DREB2D Arabidopsis thaliana AT1G75490 D 0.695
DREB2G Arabidopsis thaliana AT5G18450 D 0.720
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.677
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.760
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.732
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.779
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.704
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.680
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.693
F775_05774 Aegilops tauschii F775_05774 I 0.726
F775_32062 Aegilops tauschii F775_32062 I 0.697
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.695
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.753
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.693
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.709
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.746
GLYMA02G42960 Glycine max GLYMA02G42960 I 0.699
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.694
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.694
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.736
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.718
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.708
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.708
GLYMA14G06080 Glycine max GLYMA14G06080 I 0.699
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.693
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.693
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.691
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.710
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.691
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.707
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.708
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.690
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.695
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.682
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.748
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.696
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.724
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.724
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.764
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.711
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.758
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.719
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.694
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.729
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.687
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.680
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.680
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.733
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.726
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.726
MDP0000141335 Malus domestica MDP0000141335 I 0.692
MDP0000147009 Malus domestica MDP0000147009 I 0.744
MDP0000153866 Malus domestica MDP0000153866 I 0.706
MDP0000165880 Malus domestica MDP0000165880 I 0.747
MDP0000250924 Malus domestica MDP0000250924 I 0.698
MDP0000250927 Malus domestica MDP0000250927 I 0.700
MDP0000290585 Malus domestica MDP0000290585 I 0.757
MDP0000295902 Malus domestica MDP0000295902 I 0.692
MDP0000446783 Malus domestica MDP0000446783 I 0.744
MDP0000880312 Malus domestica MDP0000880312 I 0.695
mgf007881m Mimulus guttatus mgf007881m I 0.715
mgf017629m Mimulus guttatus mgf017629m I 0.709
mgf024545m Mimulus guttatus mgf024545m I 0.695
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.726
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.694
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.681
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.724
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.738
OB01G13930 Oryza brachyantha OB01G13930 I 0.725
OBART01G04210 Oryza barthii OBART01G04210 I 0.725
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.725
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.725
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.725
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.725
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.725
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.742
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.690
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.725
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.725
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.693
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.693
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.720
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.718
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.758
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.736
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.709
PK07402.1 Cannabis sativa PK07402.1 D 0.781
PK07829.1 Cannabis sativa PK07829.1 I 0.733
Pm003634 Prunus mume Pm003634 I 0.733
Pm006274 Prunus mume Pm006274 I 0.694
Pm015262 Prunus mume Pm015262 I 0.756
Pm018989 Prunus mume Pm018989 I 0.744
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.689
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.686
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.677
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.692
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.761
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.771
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.744
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.756
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.699
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.686
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.718
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.690
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.726
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.683
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.691
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.755
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.767
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.755
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.767
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.715
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.682
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.692
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.720
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.716
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.716
Si002067m.g Setaria italica Si002067m.g I 0.720
Si022619m.g Setaria italica Si022619m.g I 0.687
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.709
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.736
TCM_026121 Theobroma cacao TCM_026121 I 0.690
TCM_034132 Theobroma cacao TCM_034132 I 0.685
TCM_043275 Theobroma cacao TCM_043275 I 0.736
TCM_043302 Theobroma cacao TCM_043302 I 0.751
TCM_043306 Theobroma cacao TCM_043306 I 0.751
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.720
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.752
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.695
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.684
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.726
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.697
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.697
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.726
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.713
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.697
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.726
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.773
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.694