Cla010886 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla010886 T006449_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.762 0.878
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.762 0.878
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.745 0.857
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.745 0.857
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.745 0.857
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.730 0.755
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.724 0.796
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.724 0.796
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.724 0.796
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.720 0.776
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.720 0.776
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.702 0.816
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.694 0.796
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.694 0.796
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.694 0.796
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.694 0.796
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.694 0.796
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.694 0.673
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.677 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010886 AP2 84 136

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

783 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000025596 Astyanax mexicanus ENSAMXG00000025596 I 0.000
TET3 Canis familiaris ENSCAFG00000008728 I 0.000
Cmyd_10006569 Chelonia mydas Cmyd_10006569 N 0.000
ENSCSAG00000015514 Chlorocebus sabaeus ENSCSAG00000015514 I 0.000
cxxc4 Danio rerio ENSDARG00000077817 I 0.000
TET3 Dasypus novemcinctus ENSDNOG00000047130 I 0.000
ENSGMOG00000019280 Gadus morhua ENSGMOG00000019280 I 0.000
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I 0.000
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I 0.000
TET3 Homo sapiens ENSG00000187605 I 0.000
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I 0.000
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I 0.000
ENSMPUG00000007806 Mustela putorius furo ENSMPUG00000007806 I 0.000
Tet3 Mus musculus ENSMUSG00000034832 I 0.000
Myotis_brandtii_cxxc4_10005165 Myotis brandtii Myotis_brandtii_cxxc4_10005165 I 0.000
ENSNLEG00000000317 Nomascus leucogenys ENSNLEG00000000317 I 0.000
Ogr01870 Ophisaurus gracilis Ogr01870 N 0.000
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I 0.000
ENSOANG00000009530 Ornithorhynchus anatinus ENSOANG00000009530 I 0.000
TET3 Oryctolagus cuniculus ENSOCUG00000016640 I 0.000
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I 0.000
ENSOARG00000012255 Ovis aries ENSOARG00000012255 I 0.000
ENSPANG00000024069 Papio anubis ENSPANG00000024069 I 0.000
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I 0.000
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I 0.000
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I 0.000
ENSPPYG00000012286 Pongo abelii ENSPPYG00000012286 I 0.000
Tet3 Rattus norvegicus ENSRNOG00000011387 I 0.000
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I 0.000
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I 0.000
cxxc4 Takifugu rubripes ENSTRUG00000004403 I 0.000
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I 0.000
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I 0.000