Cla011673 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla011673 T006457_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.753 0.898
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.716 0.878
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.716 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011673 AP2 80 130

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.762
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.762
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.760
TCM_016176 Theobroma cacao TCM_016176 I 0.756
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.753
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.744
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.741
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.741
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.738
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.738
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.738
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.738
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.733
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.730
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.726
Bra027616 Brassica rapa Bra027616 I 0.726
Bra027615 Brassica rapa Bra027615 I 0.726
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.726
Cla004491 Citrullus lanatus Cla004491 I 0.723
Bo9g028820 Brassica oleracea Bo9g028820 I 0.723
Bo9g036590 Brassica oleracea Bo9g036590 I 0.721
30147.m014311 Ricinus communis 30147.m014311 I 0.721
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.720
ERF027 Arabidopsis thaliana AT1G12630 D 0.716
MDP0000189347 Malus domestica MDP0000189347 I 0.716
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.705
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.699
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.695
Bo8g064940 Brassica oleracea Bo8g064940 I 0.692
Bra016761 Brassica rapa Bra016761 I 0.692
Ciclev10023840m.g Citrus clementina Ciclev10023840m.g I 0.685
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.682
Pm023766 Prunus mume Pm023766 I 0.682
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.682
OBART02G27750 Oryza barthii OBART02G27750 I 0.682
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.682
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.682
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.682
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.682
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.682
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.682
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.682
Si018039m.g Setaria italica Si018039m.g I 0.682
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.682
OS02G0676800 Oryza sativa OS02G0676800 I 0.682
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.682
MDP0000262710 Malus domestica MDP0000262710 I 0.680
Eucgr.D01924 Eucalyptus grandis Eucgr.D01924 I 0.678
VIT_02s0025g04440 Vitis vinifera VIT_02s0025g04440 N 0.677
VIT_16s0100g00400 Vitis vinifera VIT_16s0100g00400 I 0.677