Cla011674 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla011674 T006458_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.767 0.840
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.767 0.840
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.767 0.840
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.767 0.840
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.756 0.820
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.756 0.820
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.753 0.820
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.753 0.820
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.753 0.820
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.753 0.820
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.753 0.820
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.753 0.820
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.732 0.820
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.732 0.820
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.732 0.820
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.712 0.740
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.712 0.740
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.710 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011674 AP2 66 117

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.839
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.836
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.832
Pm023775 Prunus mume Pm023775 I 0.828
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.828
MDP0000154764 Malus domestica MDP0000154764 I 0.825
MDP0000198054 Malus domestica MDP0000198054 I 0.818
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.818
Pm023769 Prunus mume Pm023769 I 0.813
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.813
Pm023772 Prunus mume Pm023772 I 0.812
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.806
30190.m011120 Ricinus communis 30190.m011120 I 0.805
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.803
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.798
mgf026642m Mimulus guttatus mgf026642m I 0.796
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.796
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.796
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.792
TCM_016175 Theobroma cacao TCM_016175 I 0.792
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.791
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.790
PK23332.1 Cannabis sativa PK23332.1 I 0.790
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.789
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.788
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.788
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.788
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.785
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.782
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.782
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.782
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.781
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.781
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.780
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.779
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.779
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.779
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.777
mgf017136m Mimulus guttatus mgf017136m I 0.777
Cla006315 Citrullus lanatus Cla006315 I 0.777
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.774
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.773
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.769
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.769
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.768
DREB1A Arabidopsis thaliana AT4G25480 D 0.767
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.766
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.766
mgf019061m Mimulus guttatus mgf019061m I 0.765
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.763
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.763
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.763
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.762
30147.m014313 Ricinus communis 30147.m014313 I 0.762
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.760
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.760
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.759
Cla002362 Citrullus lanatus Cla002362 I 0.758
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.757
Bra016763 Brassica rapa Bra016763 I 0.757
Bo01335s010 Brassica oleracea Bo01335s010 I 0.757
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.756
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.756
Bra028290 Brassica rapa Bra028290 I 0.756
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.756
Bo9g104770 Brassica oleracea Bo9g104770 I 0.756
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.756
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.756
DREB1D Arabidopsis thaliana AT5G51990 D 0.756
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.755
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.755
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.754
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.754
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.754
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.754
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.754
DREB1F Arabidopsis thaliana AT1G12610 D 0.753
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.753
60638.m00016 Ricinus communis 60638.m00016 I 0.753
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.753
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.752
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.752
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.752
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.752
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.751
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.751
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.751
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.751
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.751
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.750
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.749
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.748
30190.m011119 Ricinus communis 30190.m011119 I 0.748
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.748
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.747
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.746
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.746
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.745
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.743
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.743
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.743
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.742
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.740
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.740
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.737
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.737
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.736
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.736
Bra026963 Brassica rapa Bra026963 I 0.736
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.736
Bo8g108050 Brassica oleracea Bo8g108050 I 0.736
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.735
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.734
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.733
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.732
DREB1C Arabidopsis thaliana AT4G25470 D 0.732
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.731
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.730
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.729
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.729
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.729
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.728
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.727
Ca_08732 Cicer arietinum Ca_08732 I 0.726
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.722
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.722
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.722
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.722
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.722
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.720
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.720
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.720
mgf026339m Mimulus guttatus mgf026339m I 0.718
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.717
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.717
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.714
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.713
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.713
OBART02G27760 Oryza barthii OBART02G27760 I 0.712
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.712
DREB1G Oryza sativa OS02G0677300 D 0.712
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.712
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.712
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.712
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.712
DREB1G Oryza indica BGIOSGA008804 I 0.712
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.712
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.712
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.712
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.712
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.712
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.711
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.710
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.710
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.710
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.709
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.708
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.706
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.704
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.703
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.702
Si018262m.g Setaria italica Si018262m.g I 0.702
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.702
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.700
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.700
Pm019386 Prunus mume Pm019386 I 0.697
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.697
Bo5g016750 Brassica oleracea Bo5g016750 I 0.696
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.695
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.693
Ca_04504 Cicer arietinum Ca_04504 I 0.693
Ca_18948 Cicer arietinum Ca_18948 I 0.692
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.692
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.692
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.692
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.688
Pm023777 Prunus mume Pm023777 N 0.688
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.687
mgf018934m Mimulus guttatus mgf018934m I 0.686
mgf018631m Mimulus guttatus mgf018631m I 0.686
mgf016974m Mimulus guttatus mgf016974m I 0.686
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.686
mgf022408m Mimulus guttatus mgf022408m I 0.686
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.686
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.685
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.685
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.685
Bra019777 Brassica rapa Bra019777 I 0.684
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.682
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.680
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.678
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.678
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.678
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.678
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.677
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.677