Cla018549 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla018549 T006500_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.776 0.898
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.776 0.898
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.764 0.888
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.730 0.786
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018549 AP2 114 163
Cla018549 AP2 217 268

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.856
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.799
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.799
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.798
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.797
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.797
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.795
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.795
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.793
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.791
29169.m000017 Ricinus communis 29169.m000017 I 0.791
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.791
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.790
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.790
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.790
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.790
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.788
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.788
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.786
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.786
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.786
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.786
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.785
OS07G0235800 Oryza sativa OS07G0235800 I 0.785
OBART07G08110 Oryza barthii OBART07G08110 I 0.785
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.785
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.785
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.785
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.785
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.785
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.785
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.785
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.784
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.784
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.784
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.784
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.784
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.784
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.784
MDP0000200319 Malus domestica MDP0000200319 I 0.784
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.784
TCM_022077 Theobroma cacao TCM_022077 I 0.784
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.784
Pm002492 Prunus mume Pm002492 I 0.784
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.784
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.783
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.783
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.783
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.783
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.783
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.783
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.783
28752.m000339 Ricinus communis 28752.m000339 I 0.783
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.783
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.783
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.783
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.783
Si025305m.g Setaria italica Si025305m.g I 0.783
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.783
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.783
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.783
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.783
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.783
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.783
OS05G0121600 Oryza sativa OS05G0121600 I 0.783
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.783
Ca_02499 Cicer arietinum Ca_02499 I 0.783
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.783
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.783
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.783
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.782
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.782
PK07183.1 Cannabis sativa PK07183.1 I 0.782
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.782
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.781
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.781
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.781
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.781
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.781
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.781
Si036068m.g Setaria italica Si036068m.g I 0.781
Si029636m.g Setaria italica Si029636m.g I 0.781
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.781
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.780
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.780
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.779
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.779
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.779
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.779
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.778
29805.m001494 Ricinus communis 29805.m001494 I 0.778
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.778
Pm000974 Prunus mume Pm000974 I 0.778
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.778
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.778
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.778
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.778
MDP0000181606 Malus domestica MDP0000181606 I 0.778
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.778
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.778
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.778
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.778
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.778
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.777
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.777
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.777
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.777
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.777
TCM_042000 Theobroma cacao TCM_042000 I 0.777
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.777
Ca_14618 Cicer arietinum Ca_14618 I 0.777
F775_32962 Aegilops tauschii F775_32962 I 0.777
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.777
PK02403.1 Cannabis sativa PK02403.1 I 0.777
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.777
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.777
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.777
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.777
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.777
Cla000716 Citrullus lanatus Cla000716 I 0.777
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.777
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.777
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.777
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.777
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.777
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.777
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.777
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.777
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.777
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.777
Bra017809 Brassica rapa Bra017809 I 0.776
Bra011741 Brassica rapa Bra011741 I 0.776
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.776
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.776
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.776
Bo7g118400 Brassica oleracea Bo7g118400 I 0.776
Bo1g004960 Brassica oleracea Bo1g004960 I 0.776
mgf009315m Mimulus guttatus mgf009315m I 0.776
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.776
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.776
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.776
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.776
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.776
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.776
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.776
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.776
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.776
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.776
Ca_09295 Cicer arietinum Ca_09295 I 0.776
AP2 Arabidopsis thaliana AT4G36920 I 0.776
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.775
Cla018124 Citrullus lanatus Cla018124 I 0.775
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.775
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.775
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.774
MDP0000163645 Malus domestica MDP0000163645 I 0.774
mgf021945m Mimulus guttatus mgf021945m I 0.774
Bo4g070350 Brassica oleracea Bo4g070350 I 0.774
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.774
Bra011939 Brassica rapa Bra011939 I 0.774
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.773
TCM_000665 Theobroma cacao TCM_000665 I 0.773
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.773
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.773
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.772
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.770
OB03G45870 Oryza brachyantha OB03G45870 I 0.770
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.770
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.768
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.766
Si012635m.g Setaria italica Si012635m.g I 0.766
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.766
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.766
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.766
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.766
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.766
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.766
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.766
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.766
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.766
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.766
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.766
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.765
Ca_12010 Cicer arietinum Ca_12010 I 0.765
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.765
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.765
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.764
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.763
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.763
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.762
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.762
Pm030172 Prunus mume Pm030172 I 0.760
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.760
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.760
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.760
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.760
MDP0000137561 Malus domestica MDP0000137561 I 0.759
mgf010466m Mimulus guttatus mgf010466m I 0.758
mgf005133m Mimulus guttatus mgf005133m I 0.758
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.756
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.755
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.754
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.754
OB06G29960 Oryza brachyantha OB06G29960 I 0.754
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.754
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.754
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.754
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.753
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.753
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.750
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.745
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.742
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.740
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.738
Bra012139 Brassica rapa Bra012139 I 0.735
Bo7g064000 Brassica oleracea Bo7g064000 I 0.735
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.735
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.734
Cla020549 Citrullus lanatus Cla020549 I 0.731
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.730
P93632_MAIZE Zea mays P93632_MAIZE D 0.730
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.730
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.726
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.726
OS03G0818800 Oryza sativa OS03G0818800 I 0.726
TOE3 Arabidopsis thaliana AT5G67180 I 0.726
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.726
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.726
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.725
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.724
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.724
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.723
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.719
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.719
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.707