Cla020549 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla020549 T006510_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.795 0.923
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.789 0.923
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.775 0.901
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.742 0.835
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla020549 AP2 141 191
Cla020549 AP2 233 276

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.807
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.806
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.806
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.804
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.798
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.797
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.797
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.796
Pm002492 Prunus mume Pm002492 I 0.796
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.796
TCM_022077 Theobroma cacao TCM_022077 I 0.796
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.796
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.796
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.796
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.796
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.796
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.796
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.796
OS07G0235800 Oryza sativa OS07G0235800 I 0.795
OS05G0121600 Oryza sativa OS05G0121600 I 0.795
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.795
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.795
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.795
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.795
OBART07G08110 Oryza barthii OBART07G08110 I 0.795
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.795
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.795
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.795
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.795
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.795
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.795
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.795
Si029636m.g Setaria italica Si029636m.g I 0.795
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.795
MDP0000200319 Malus domestica MDP0000200319 I 0.795
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.795
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.795
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.795
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.795
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.795
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.795
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.795
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.795
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.795
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.795
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.795
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.795
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.795
Cla018124 Citrullus lanatus Cla018124 I 0.795
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.795
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.795
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.795
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.795
Si025305m.g Setaria italica Si025305m.g I 0.795
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.795
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.795
Bo4g070350 Brassica oleracea Bo4g070350 I 0.795
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.795
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.795
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.795
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.795
Bra011939 Brassica rapa Bra011939 I 0.795
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.795
Si036068m.g Setaria italica Si036068m.g I 0.794
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.794
Ca_02499 Cicer arietinum Ca_02499 I 0.794
28752.m000339 Ricinus communis 28752.m000339 I 0.794
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.794
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.794
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.794
OS03G0818800 Oryza sativa OS03G0818800 I 0.794
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.794
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.794
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.794
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.794
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.794
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.794
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.794
PK07183.1 Cannabis sativa PK07183.1 I 0.793
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.791
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.790
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.790
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.790
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.790
MDP0000181606 Malus domestica MDP0000181606 I 0.790
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.790
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.790
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.790
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.790
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.790
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.790
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.790
PK02403.1 Cannabis sativa PK02403.1 I 0.790
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.790
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.790
mgf009315m Mimulus guttatus mgf009315m I 0.790
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.790
Cla000716 Citrullus lanatus Cla000716 I 0.790
TCM_000665 Theobroma cacao TCM_000665 I 0.790
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.790
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.790
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.790
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.790
Pm000974 Prunus mume Pm000974 I 0.790
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.790
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.790
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.790
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.790
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.790
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.790
Ca_09295 Cicer arietinum Ca_09295 I 0.789
Ca_14618 Cicer arietinum Ca_14618 I 0.789
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.789
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.789
Bo1g004960 Brassica oleracea Bo1g004960 I 0.789
F775_32962 Aegilops tauschii F775_32962 I 0.789
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.789
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.789
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.789
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.789
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.789
Bra011741 Brassica rapa Bra011741 I 0.789
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.789
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.789
Bo7g118400 Brassica oleracea Bo7g118400 I 0.789
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.789
mgf021945m Mimulus guttatus mgf021945m I 0.789
AP2 Arabidopsis thaliana AT4G36920 I 0.789
Bra017809 Brassica rapa Bra017809 I 0.789
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.789
29805.m001494 Ricinus communis 29805.m001494 I 0.789
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.789
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.789
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.789
TCM_042000 Theobroma cacao TCM_042000 I 0.789
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.789
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.788
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.788
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.788
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.788
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.788
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.788
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.785
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.783
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.783
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.783
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.783
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.783
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.783
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.783
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.783
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.783
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.783
Si012635m.g Setaria italica Si012635m.g I 0.783
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.783
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.783
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.783
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.781
OB03G45870 Oryza brachyantha OB03G45870 I 0.780
29169.m000017 Ricinus communis 29169.m000017 I 0.780
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.780
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.779
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.779
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.779
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.779
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.779
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.778
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.778
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.777
Ca_12010 Cicer arietinum Ca_12010 I 0.777
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.777
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.776
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.776
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.775
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.775
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.774
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.774
Pm030172 Prunus mume Pm030172 I 0.774
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.774
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.774
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.773
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.773
MDP0000137561 Malus domestica MDP0000137561 I 0.773
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.773
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.773
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.773
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.772
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.772
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.771
mgf005133m Mimulus guttatus mgf005133m I 0.771
mgf010466m Mimulus guttatus mgf010466m I 0.771
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.770
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.768
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.768
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.768
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.768
OB06G29960 Oryza brachyantha OB06G29960 I 0.768
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.768
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.768
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.768
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.768
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.766
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.766
MDP0000163645 Malus domestica MDP0000163645 I 0.764
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.763
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.758
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.757
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.757
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.754
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.754
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.753
TOE3 Arabidopsis thaliana AT5G67180 I 0.751
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.751
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.750
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.749
Bo7g064000 Brassica oleracea Bo7g064000 I 0.749
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.749
Bra012139 Brassica rapa Bra012139 I 0.749
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.748
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.743
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.743
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.742
P93632_MAIZE Zea mays P93632_MAIZE D 0.742
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.740
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.740
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.740
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.740
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.737
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.737
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.737
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.736
Cla018549 Citrullus lanatus Cla018549 I 0.731
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.731
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.731
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.728
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.699
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
PK14490.1 Cannabis sativa PK14490.1 I 0.689