CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla020549
(
Citrullus lanatus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cla020549
T006510_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD
HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.795
0.923
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.789
0.923
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.775
0.901
P93632_MAIZE
M09712_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.742
0.835
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla020549
AP2
141
191
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGS
Cla020549
AP2
233
276
SKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARLPDY
Links
Other
AP2
family TFs
Other
Citrullus lanatus
TFs
238 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0247s0170
Salix purpurea
SapurV1A.0247s0170
I
0.807
GLYMA11G15650
Glycine max
GLYMA11G15650
I
0.806
orange1.1g010454m.g
Citrus sinensis
orange1.1g010454m.g
I
0.806
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.804
GSMUA_Achr5G29290_001
Musa acuminata
GSMUA_Achr5G29290_001
I
0.798
evm.TU.supercontig_139.43
Carica papaya
evm.TU.supercontig_139.43
I
0.797
GRMZM5G862109
Zea mays
GRMZM5G862109
I
0.797
VIT_08s0040g03180
Vitis vinifera
VIT_08s0040g03180
I
0.796
Pm002492
Prunus mume
Pm002492
I
0.796
GSMUA_Achr10G03230_001
Musa acuminata
GSMUA_Achr10G03230_001
I
0.796
TCM_022077
Theobroma cacao
TCM_022077
I
0.796
Cucsa.367290
Cucumis sativus
Cucsa.367290
I
0.796
Gorai.002G251500
Gossypium raimondii
Gorai.002G251500
I
0.796
GSMUA_Achr6G33140_001
Musa acuminata
GSMUA_Achr6G33140_001
I
0.796
POPTR_0016s08530
Populus trichocarpa
POPTR_0016s08530
I
0.796
VIT_13s0019g03550
Vitis vinifera
VIT_13s0019g03550
I
0.796
GSMUA_AchrUn_randomG10320_001
Musa acuminata
GSMUA_AchrUn_randomG10320_001
I
0.796
PRUPE_ppa005230mg
Prunus persica
PRUPE_ppa005230mg
I
0.796
OS07G0235800
Oryza sativa
OS07G0235800
I
0.795
OS05G0121600
Oryza sativa
OS05G0121600
I
0.795
ORUFI07G08180
Oryza rufipogon
ORUFI07G08180
I
0.795
OPUNC07G07690
Oryza punctata
OPUNC07G07690
I
0.795
OLONG_021321
Oryza longistaminata
OLONG_021321
I
0.795
OGLUM07G07330
Oryza glumaepatula
OGLUM07G07330
I
0.795
OBART07G08110
Oryza barthii
OBART07G08110
I
0.795
MTR_4g061200
Medicago truncatula
MTR_4g061200
I
0.795
OMERI07G06850
Oryza meridionalis
OMERI07G06850
I
0.795
ONIVA03G25220
Oryza nivara
ONIVA03G25220
I
0.795
ORGLA05G0015400
Oryza glaberrima
ORGLA05G0015400
I
0.795
PGSC0003DMG400025390
Solanum tuberosum
PGSC0003DMG400025390
I
0.795
OPUNC05G01480
Oryza punctata
OPUNC05G01480
I
0.795
ORGLA07G0068600
Oryza glaberrima
ORGLA07G0068600
I
0.795
Si029636m.g
Setaria italica
Si029636m.g
I
0.795
Pavir.Ba03394
Panicum virgatum
Pavir.Ba03394
I
0.795
MDP0000200319
Malus domestica
MDP0000200319
I
0.795
Ciclev10028259m.g
Citrus clementina
Ciclev10028259m.g
I
0.795
Carubv10025387m.g
Capsella rubella
Carubv10025387m.g
I
0.795
Pavir.J11433
Panicum virgatum
Pavir.J11433
I
0.795
Pavir.J23348
Panicum virgatum
Pavir.J23348
I
0.795
PDK_20s1506731g001
Phoenix dactylifera
PDK_20s1506731g001
I
0.795
chr3.LjT05P05.30.nd
Lotus japonicus
chr3.LjT05P05.30.nd
I
0.795
Thhalv10016626m.g
Eutrema salsugineum
Thhalv10016626m.g
I
0.795
Cagra.1809s0003
Capsella grandiflora
Cagra.1809s0003
I
0.795
Aquca_027_00133
Aquilegia coerulea
Aquca_027_00133
I
0.795
GSMUA_Achr9G03060_001
Musa acuminata
GSMUA_Achr9G03060_001
I
0.795
AMTR_s00035p00205430
Amborella trichopoda
AMTR_s00035p00205430
I
0.795
Sb02g007000
Sorghum bicolor
Sb02g007000
I
0.795
RAP2.7
Vitis vinifera
VIT_06s0004g03590
I
0.795
Cla018124
Citrullus lanatus
Cla018124
I
0.795
Cucsa.307230
Cucumis sativus
Cucsa.307230
I
0.795
cassava24954.valid.m1
Manihot esculenta
cassava24954.valid.m1
I
0.795
cassava13566.valid.m1
Manihot esculenta
cassava13566.valid.m1
I
0.795
PGSC0003DMG400027904
Solanum tuberosum
PGSC0003DMG400027904
I
0.795
Si025305m.g
Setaria italica
Si025305m.g
I
0.795
GSMUA_Achr6G34420_001
Musa acuminata
GSMUA_Achr6G34420_001
I
0.795
BGIOSGA025426
Oryza indica
BGIOSGA025426
I
0.795
Bo4g070350
Brassica oleracea
Bo4g070350
I
0.795
BRADI1G53650
Brachypodium distachyon
BRADI1G53650
I
0.795
GLYMA12G07800
Glycine max
GLYMA12G07800
I
0.795
GRMZM2G176175
Zea mays
GRMZM2G176175
I
0.795
BGIOSGA018911
Oryza indica
BGIOSGA018911
I
0.795
Bra011939
Brassica rapa
Bra011939
I
0.795
RAP2.7
Arabidopsis thaliana
AT2G28550
D
0.795
Si036068m.g
Setaria italica
Si036068m.g
I
0.794
GLYMA03G33470
Glycine max
GLYMA03G33470
I
0.794
Ca_02499
Cicer arietinum
Ca_02499
I
0.794
28752.m000339
Ricinus communis
28752.m000339
I
0.794
Eucgr.J02113
Eucalyptus grandis
Eucgr.J02113
I
0.794
OMERI03G35820
Oryza meridionalis
OMERI03G35820
I
0.794
OPUNC03G36030
Oryza punctata
OPUNC03G36030
I
0.794
OS03G0818800
Oryza sativa
OS03G0818800
I
0.794
Pavir.J41060
Panicum virgatum
Pavir.J41060
I
0.794
GLYMA13G40470
Glycine max
GLYMA13G40470
I
0.794
Pavir.J23520
Panicum virgatum
Pavir.J23520
I
0.794
MLOC_43575
Hordeum vulgare
MLOC_43575
I
0.794
LjT39B13.80.nc
Lotus japonicus
LjT39B13.80.nc
I
0.794
Sb01g003400
Sorghum bicolor
Sb01g003400
I
0.794
MTR_2g093060
Medicago truncatula
MTR_2g093060
I
0.794
PK07183.1
Cannabis sativa
PK07183.1
I
0.793
Lus10023165.g
Linum usitatissimum
Lus10023165.g
I
0.791
SapurV1A.1340s0010
Salix purpurea
SapurV1A.1340s0010
I
0.790
GLYMA05G18041
Glycine max
GLYMA05G18041
I
0.790
Gorai.008G077800
Gossypium raimondii
Gorai.008G077800
I
0.790
Gorai.007G215900
Gossypium raimondii
Gorai.007G215900
I
0.790
MDP0000181606
Malus domestica
MDP0000181606
I
0.790
SapurV1A.0689s0070
Salix purpurea
SapurV1A.0689s0070
I
0.790
POPTR_0005s18400
Populus trichocarpa
POPTR_0005s18400
I
0.790
POPTR_0006s13460
Populus trichocarpa
POPTR_0006s13460
I
0.790
POPTR_0007s10780
Populus trichocarpa
POPTR_0007s10780
I
0.790
SapurV1A.0209s0320
Salix purpurea
SapurV1A.0209s0320
I
0.790
Solyc02g093150.2
Solanum lycopersicum
Solyc02g093150.2
I
0.790
Solyc03g044300.2
Solanum lycopersicum
Solyc03g044300.2
I
0.790
PK02403.1
Cannabis sativa
PK02403.1
I
0.790
GLYMA17G18640
Glycine max
GLYMA17G18640
I
0.790
Cucsa.102550
Cucumis sativus
Cucsa.102550
I
0.790
mgf009315m
Mimulus guttatus
mgf009315m
I
0.790
evm.TU.supercontig_55.116
Carica papaya
evm.TU.supercontig_55.116
I
0.790
Cla000716
Citrullus lanatus
Cla000716
I
0.790
TCM_000665
Theobroma cacao
TCM_000665
I
0.790
GLYMA01G39520
Glycine max
GLYMA01G39520
I
0.790
TOE3
Vitis vinifera
VIT_07s0031g00220
I
0.790
Gorai.003G025900
Gossypium raimondii
Gorai.003G025900
I
0.790
Aquca_010_00628
Aquilegia coerulea
Aquca_010_00628
I
0.790
Pm000974
Prunus mume
Pm000974
I
0.790
MTR_5g016810
Medicago truncatula
MTR_5g016810
I
0.790
GRMZM2G700665
Zea mays
GRMZM2G700665
I
0.790
GSMUA_Achr1G26080_001
Musa acuminata
GSMUA_Achr1G26080_001
I
0.790
PGSC0003DMG400004006
Solanum tuberosum
PGSC0003DMG400004006
I
0.790
GSMUA_Achr3G13180_001
Musa acuminata
GSMUA_Achr3G13180_001
I
0.790
PGSC0003DMG400006482
Solanum tuberosum
PGSC0003DMG400006482
I
0.790
Ca_09295
Cicer arietinum
Ca_09295
I
0.789
Ca_14618
Cicer arietinum
Ca_14618
I
0.789
GSMUA_Achr8G18550_001
Musa acuminata
GSMUA_Achr8G18550_001
I
0.789
Gorai.004G002100
Gossypium raimondii
Gorai.004G002100
I
0.789
Bo1g004960
Brassica oleracea
Bo1g004960
I
0.789
F775_32962
Aegilops tauschii
F775_32962
I
0.789
Traes_1DS_2BB06F54C
Triticum aestivum
Traes_1DS_2BB06F54C
I
0.789
AP2
Arabidopsis lyrata
fgenesh2_kg.7__332__AT4G36920.1
I
0.789
LjSGA_005424.1
Lotus japonicus
LjSGA_005424.1
I
0.789
Q9XHD4_PETHY
Petunia x hybrida
Q9XHD4_PETHY
D
0.789
chr1.CM0033.300.nc
Lotus japonicus
chr1.CM0033.300.nc
I
0.789
Bra011741
Brassica rapa
Bra011741
I
0.789
Cagra.4909s0048
Capsella grandiflora
Cagra.4909s0048
I
0.789
Carubv10004818m.g
Capsella rubella
Carubv10004818m.g
I
0.789
Bo7g118400
Brassica oleracea
Bo7g118400
I
0.789
Bostr.7867s1579
Boechera stricta
Bostr.7867s1579
I
0.789
mgf021945m
Mimulus guttatus
mgf021945m
I
0.789
AP2
Arabidopsis thaliana
AT4G36920
I
0.789
Bra017809
Brassica rapa
Bra017809
I
0.789
Traes_1BS_E68807072
Triticum aestivum
Traes_1BS_E68807072
I
0.789
29805.m001494
Ricinus communis
29805.m001494
I
0.789
BRADI2G37800
Brachypodium distachyon
BRADI2G37800
I
0.789
Traes_1AS_90F3120F8
Triticum aestivum
Traes_1AS_90F3120F8
I
0.789
Solyc10g084340.1
Solanum lycopersicum
Solyc10g084340.1
I
0.789
TCM_042000
Theobroma cacao
TCM_042000
I
0.789
MTR_4g094868
Medicago truncatula
MTR_4g094868
I
0.789
OGLUM03G38790
Oryza glumaepatula
OGLUM03G38790
I
0.788
GSMUA_AchrUn_randomG16200_001
Musa acuminata
GSMUA_AchrUn_randomG16200_001
I
0.788
ORUFI03G40640
Oryza rufipogon
ORUFI03G40640
I
0.788
BGIOSGA013826
Oryza indica
BGIOSGA013826
I
0.788
ONIVA03G40610
Oryza nivara
ONIVA03G40610
I
0.788
GSMUA_Achr1G09830_001
Musa acuminata
GSMUA_Achr1G09830_001
I
0.788
Aquca_007_00714
Aquilegia coerulea
Aquca_007_00714
I
0.785
ORGLA04G0237800
Oryza glaberrima
ORGLA04G0237800
I
0.783
GSMUA_Achr8G01980_001
Musa acuminata
GSMUA_Achr8G01980_001
I
0.783
ORUFI04G29120
Oryza rufipogon
ORUFI04G29120
I
0.783
BGIOSGA017250
Oryza indica
BGIOSGA017250
I
0.783
PGSC0003DMG400025479
Solanum tuberosum
PGSC0003DMG400025479
I
0.783
OMERI04G22900
Oryza meridionalis
OMERI04G22900
I
0.783
OGLUM04G27380
Oryza glumaepatula
OGLUM04G27380
I
0.783
GRMZM2G174784
Zea mays
GRMZM2G174784
I
0.783
Sb06g030670
Sorghum bicolor
Sb06g030670
I
0.783
ONIVA04G25920
Oryza nivara
ONIVA04G25920
I
0.783
Si012635m.g
Setaria italica
Si012635m.g
I
0.783
BRADI5G24100
Brachypodium distachyon
BRADI5G24100
I
0.783
Solyc02g064960.2
Solanum lycopersicum
Solyc02g064960.2
I
0.783
OPUNC04G24930
Oryza punctata
OPUNC04G24930
I
0.783
GSMUA_Achr3G28340_001
Musa acuminata
GSMUA_Achr3G28340_001
I
0.781
OB03G45870
Oryza brachyantha
OB03G45870
I
0.780
29169.m000017
Ricinus communis
29169.m000017
I
0.780
cassava12358.valid.m1
Manihot esculenta
cassava12358.valid.m1
I
0.780
Lus10026477.g
Linum usitatissimum
Lus10026477.g
I
0.779
Lus10009374.g
Linum usitatissimum
Lus10009374.g
I
0.779
Lus10019905.g
Linum usitatissimum
Lus10019905.g
I
0.779
Lus10019331.g
Linum usitatissimum
Lus10019331.g
I
0.779
GSMUA_Achr9G04270_001
Musa acuminata
GSMUA_Achr9G04270_001
I
0.779
Gorai.009G104200
Gossypium raimondii
Gorai.009G104200
I
0.778
Cucsa.051660
Cucumis sativus
Cucsa.051660
I
0.778
MTR_7g100590
Medicago truncatula
MTR_7g100590
I
0.777
Ca_12010
Cicer arietinum
Ca_12010
I
0.777
GSMUA_Achr4G06100_001
Musa acuminata
GSMUA_Achr4G06100_001
I
0.777
evm.TU.supercontig_114.55
Carica papaya
evm.TU.supercontig_114.55
I
0.776
cassava2301.valid.m1
Manihot esculenta
cassava2301.valid.m1
I
0.776
Q9XHD3_PETHY
Petunia x hybrida
Q9XHD3_PETHY
D
0.775
Eucgr.B02453
Eucalyptus grandis
Eucgr.B02453
I
0.775
Eucgr.I00892
Eucalyptus grandis
Eucgr.I00892
I
0.774
orange1.1g010763m.g
Citrus sinensis
orange1.1g010763m.g
I
0.774
Pm030172
Prunus mume
Pm030172
I
0.774
PRUPE_ppa003783mg
Prunus persica
PRUPE_ppa003783mg
I
0.774
gene23876-v1.0-hybrid
Fragaria vesca
gene23876-v1.0-hybrid
I
0.774
SapurV1A.0038s0220
Salix purpurea
SapurV1A.0038s0220
I
0.773
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.773
MDP0000137561
Malus domestica
MDP0000137561
I
0.773
Pavir.J37968
Panicum virgatum
Pavir.J37968
I
0.773
Solyc06g075510.2
Solanum lycopersicum
Solyc06g075510.2
I
0.773
POPTR_0008s04490
Populus trichocarpa
POPTR_0008s04490
I
0.773
GLYMA19G36200
Glycine max
GLYMA19G36200
I
0.772
GSMUA_Achr11G23870_001
Musa acuminata
GSMUA_Achr11G23870_001
I
0.772
Lus10018124.g
Linum usitatissimum
Lus10018124.g
I
0.771
mgf005133m
Mimulus guttatus
mgf005133m
I
0.771
mgf010466m
Mimulus guttatus
mgf010466m
I
0.771
Gorai.011G106200
Gossypium raimondii
Gorai.011G106200
I
0.770
ORUFI06G23930
Oryza rufipogon
ORUFI06G23930
I
0.768
OPUNC06G19990
Oryza punctata
OPUNC06G19990
I
0.768
ONIVA06G26190
Oryza nivara
ONIVA06G26190
I
0.768
BGIOSGA020813
Oryza indica
BGIOSGA020813
I
0.768
OB06G29960
Oryza brachyantha
OB06G29960
I
0.768
GSMUA_Achr5G07270_001
Musa acuminata
GSMUA_Achr5G07270_001
I
0.768
LPERR06G18460
Leersia perrieri
LPERR06G18460
I
0.768
OGLUM06G23380
Oryza glumaepatula
OGLUM06G23380
I
0.768
OMERI06G22190
Oryza meridionalis
OMERI06G22190
I
0.768
Lus10015055.g
Linum usitatissimum
Lus10015055.g
I
0.766
GLYMA15G04930
Glycine max
GLYMA15G04930
I
0.766
MDP0000163645
Malus domestica
MDP0000163645
I
0.764
Ciclev10031306m.g
Citrus clementina
Ciclev10031306m.g
I
0.763
AMTR_s00058p00216470
Amborella trichopoda
AMTR_s00058p00216470
I
0.758
Ciclev10025364m.g
Citrus clementina
Ciclev10025364m.g
I
0.757
orange1.1g009943m.g
Citrus sinensis
orange1.1g009943m.g
I
0.757
GSMUA_Achr8G21030_001
Musa acuminata
GSMUA_Achr8G21030_001
I
0.754
Pavir.J27340
Panicum virgatum
Pavir.J27340
I
0.754
MLOC_43041
Hordeum vulgare
MLOC_43041
I
0.753
TOE3
Arabidopsis thaliana
AT5G67180
I
0.751
Lus10004990.g
Linum usitatissimum
Lus10004990.g
I
0.751
cassava13884.valid.m1
Manihot esculenta
cassava13884.valid.m1
I
0.750
GRMZM2G160730
Zea mays
GRMZM2G160730
I
0.749
Bo7g064000
Brassica oleracea
Bo7g064000
I
0.749
Thhalv10004742m.g
Eutrema salsugineum
Thhalv10004742m.g
I
0.749
Bra012139
Brassica rapa
Bra012139
I
0.749
BRADI1G30337
Brachypodium distachyon
BRADI1G30337
I
0.748
gene18102-v1.0-hybrid
Fragaria vesca
gene18102-v1.0-hybrid
I
0.743
Sb10g025053
Sorghum bicolor
Sb10g025053
I
0.743
Lus10041595.g
Linum usitatissimum
Lus10041595.g
I
0.742
P93632_MAIZE
Zea mays
P93632_MAIZE
D
0.742
Bostr.0568s0140
Boechera stricta
Bostr.0568s0140
I
0.740
Cagra.0342s0004
Capsella grandiflora
Cagra.0342s0004
I
0.740
Carubv10026667m.g
Capsella rubella
Carubv10026667m.g
I
0.740
TOE3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002628
I
0.740
Lus10036141.g
Linum usitatissimum
Lus10036141.g
I
0.737
Pavir.Da00466
Panicum virgatum
Pavir.Da00466
I
0.737
gene25394-v1.0-hybrid
Fragaria vesca
gene25394-v1.0-hybrid
I
0.737
Cucsa.065640
Cucumis sativus
Cucsa.065640
I
0.736
Cla018549
Citrullus lanatus
Cla018549
I
0.731
LPERR05G01420
Leersia perrieri
LPERR05G01420
I
0.731
OLONG_026757
Oryza longistaminata
OLONG_026757
I
0.731
Ciclev10011588m.g
Citrus clementina
Ciclev10011588m.g
I
0.728
Traes_7DL_7B0ABD21E
Triticum aestivum
Traes_7DL_7B0ABD21E
I
0.699
Solyc11g072600.1
Solanum lycopersicum
Solyc11g072600.1
I
0.689
PK14490.1
Cannabis sativa
PK14490.1
I
0.689