Cla021763 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla021763 T006523_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM

KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.680 0.686
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.680 0.569
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.680 0.569
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.680 0.569
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla021763 AP2 91 142

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.807
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.729
Cla008128 Citrullus lanatus Cla008128 I 0.725
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.725
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.721
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.721
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.721
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.721
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.717
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.713
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.702
Cucsa.283620 Cucumis sativus Cucsa.283620 N 0.697
Cla020699 Citrullus lanatus Cla020699 N 0.697
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.692
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.689
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.684
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.684
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.681
Ca_05485 Cicer arietinum Ca_05485 I 0.681
TCM_011811 Theobroma cacao TCM_011811 I 0.681
ERF118 Arabidopsis thaliana AT1G68550 D 0.680
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.680
PK24580.1 Cannabis sativa PK24580.1 D 0.680