CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm018608
(
Prunus mume
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pm018608
T006608_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.830
0.958
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.821
0.958
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm018608
AP2
175
224
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRG
Links
Other
AP2
family TFs
Other
Prunus mume
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy