CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm024605
(
Prunus mume
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pm024605
T006639_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.679
0.816
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.679
0.816
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm024605
AP2
50
101
QHYRGVRQRKWGKWAAEIRDPIRAARLWLGTYDTAEAAALAYDKAALSFKGS
Links
Other
AP2
family TFs
Other
Prunus mume
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa015392mg
Prunus persica
PRUPE_ppa015392mg
I
0.737
Eucgr.G01970
Eucalyptus grandis
Eucgr.G01970
I
0.697
Ciclev10032575m.g
Citrus clementina
Ciclev10032575m.g
I
0.692
Lus10022426.g
Linum usitatissimum
Lus10022426.g
I
0.692
orange1.1g036963m.g
Citrus sinensis
orange1.1g036963m.g
I
0.692
30147.m014403
Ricinus communis
30147.m014403
I
0.692
evm.TU.supercontig_13.175
Carica papaya
evm.TU.supercontig_13.175
I
0.690
Solyc12g042210.1
Solanum lycopersicum
Solyc12g042210.1
I
0.689
Cucsa.156890
Cucumis sativus
Cucsa.156890
I
0.689
Cla019618
Citrullus lanatus
Cla019618
I
0.689
Ciclev10003903m.g
Citrus clementina
Ciclev10003903m.g
I
0.687
orange1.1g005229m.g
Citrus sinensis
orange1.1g005229m.g
I
0.687
chr4.CM0175.50.nd
Lotus japonicus
chr4.CM0175.50.nd
I
0.685
cassava10717.m1
Manihot esculenta
cassava10717.m1
I
0.685
TCM_017352
Theobroma cacao
TCM_017352
I
0.684
GLYMA19G27790
Glycine max
GLYMA19G27790
I
0.684
Cucsa.349200
Cucumis sativus
Cucsa.349200
I
0.684
GLYMA16G05190
Glycine max
GLYMA16G05190
I
0.684
Cla007205
Citrullus lanatus
Cla007205
I
0.684
VIT_14s0068g01040
Vitis vinifera
VIT_14s0068g01040
I
0.683
Aquca_043_00039
Aquilegia coerulea
Aquca_043_00039
I
0.682
fgenesh2_kg.6__690__AT5G07310.1
Arabidopsis lyrata
fgenesh2_kg.6__690__AT5G07310.1
I
0.682
Bostr.13129s0235
Boechera stricta
Bostr.13129s0235
I
0.682
Cagra.2662s0009
Capsella grandiflora
Cagra.2662s0009
I
0.682
Carubv10002723m.g
Capsella rubella
Carubv10002723m.g
I
0.682
GLYMA02G07310
Glycine max
GLYMA02G07310
I
0.682
Bra028703
Brassica rapa
Bra028703
I
0.682
Bra009272
Brassica rapa
Bra009272
I
0.682
Thhalv10015583m.g
Eutrema salsugineum
Thhalv10015583m.g
I
0.682
GLYMA16G26320
Glycine max
GLYMA16G26320
I
0.682
Bo9g175390
Brassica oleracea
Bo9g175390
I
0.682
chr1.CM1880.220.nd
Lotus japonicus
chr1.CM1880.220.nd
I
0.681
cassava45576.m1
Manihot esculenta
cassava45576.m1
I
0.681
30131.m006971
Ricinus communis
30131.m006971
I
0.681
Bra005932
Brassica rapa
Bra005932
I
0.680
TCM_014762
Theobroma cacao
TCM_014762
I
0.679
chr1.CM0094.670.nd
Lotus japonicus
chr1.CM0094.670.nd
I
0.679
POPTR_0012s11030
Populus trichocarpa
POPTR_0012s11030
I
0.679
GLYMA06G17180
Glycine max
GLYMA06G17180
I
0.679
SapurV1A.0517s0130
Salix purpurea
SapurV1A.0517s0130
I
0.679
Bo2g008570
Brassica oleracea
Bo2g008570
I
0.679
gene06407-v1.0-hybrid
Fragaria vesca
gene06407-v1.0-hybrid
I
0.679
cassava19959.m1
Manihot esculenta
cassava19959.m1
I
0.679
ERF115
Arabidopsis thaliana
AT5G07310
D
0.679
Bo3g004290
Brassica oleracea
Bo3g004290
I
0.678