27810.m000639 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 27810.m000639 T006677_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN

NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.815 0.980
DREB2F
M06630_2.00
Arabidopsis thaliana
YCDCCRCCGCY

RGCGGYGGHGR
Dap-seq
OMalley et al.(2016)
AT3G57600_col_a
0.765 0.900
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.685 0.780
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
27810.m000639 AP2 28 79

Links

Other AP2 family TFs
Other Ricinus communis TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK08602.1 Cannabis sativa PK08602.1 D 0.815
DREB2F Arabidopsis thaliana AT3G57600 D 0.765
DREB2G Arabidopsis thaliana AT5G18450 D 0.685
PK07402.1 Cannabis sativa PK07402.1 D 0.681
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.705
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.692
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.748
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.758
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.781
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.678
mgf017629m Mimulus guttatus mgf017629m I 0.697
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.815
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.765
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.685
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.765
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.678
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.678
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.825
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.825
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.774
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.772
TCM_024756 Theobroma cacao TCM_024756 I 0.815
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.811
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.825
Ca_07264 Cicer arietinum Ca_07264 I 0.825
Cla012194 Citrullus lanatus Cla012194 I 0.679
Cla017778 Citrullus lanatus Cla017778 I 0.789
Pm003634 Prunus mume Pm003634 I 0.688
Pm025865 Prunus mume Pm025865 I 0.818
30170.m014115 Ricinus communis 30170.m014115 I 0.678
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.765
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.678
MDP0000703626 Malus domestica MDP0000703626 I 0.818
MDP0000871361 Malus domestica MDP0000871361 I 0.818
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.678
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.815
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.821
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.821
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.825
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.800
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.759
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.685
MDP0000250927 Malus domestica MDP0000250927 I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.815
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.801
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.689
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.807
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.678
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.825
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.809
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.816
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.816
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.681
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.785
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.811
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.821
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.825
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.821
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.821
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.781
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.825
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.802
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.821
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.821
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.814
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.765
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.678
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.821
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.704
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.821
Bo4g111040 Brassica oleracea Bo4g111040 I 0.750
Bo6g073020 Brassica oleracea Bo6g073020 I 0.769
Bo6g086320 Brassica oleracea Bo6g086320 I 0.679
Bo8g092010 Brassica oleracea Bo8g092010 I 0.768
Bo9g155940 Brassica oleracea Bo9g155940 I 0.685
Bra002159 Brassica rapa Bra002159 I 0.685
Bra003752 Brassica rapa Bra003752 I 0.679
Bra007341 Brassica rapa Bra007341 I 0.768
Bra014617 Brassica rapa Bra014617 I 0.750
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.825
DREB2A Oryza sativa OS01G0165000 I 0.684
DREB2E Oryza sativa OS03G0174400 I 0.821
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.825
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.680
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.805
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.825
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.818
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.688
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.685
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.774
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.821
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OBART03G05550 Oryza barthii OBART03G05550 I 0.821
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.821
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.821
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.821
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.821
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.705