28206.m000104 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 28206.m000104 T006683_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN

NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.863 0.960
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.843 0.920
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.843 0.920
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN

NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.717 0.860
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW

WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.717 0.860
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.685 0.640
ERF054
M06647_2.00
Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC

GDCGGYGSHDDNNNNNNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_col_a
0.685 0.800
ERF054
M06648_2.00
Arabidopsis thaliana
NNNNHDBCRCCGHCM

KGDCGGYGVHDNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a
0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
28206.m000104 AP2 175 226

Links

Other AP2 family TFs
Other Ricinus communis TFs

458 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB09962.1 Alternaria brassicicola AB09962.1 N 0.000
AOL_s00083g275 Arthrobotrys oligospora AOL_s00083g275 N 0.000
ARB_01790 Arthroderma benhamiae ARB_01790 N 0.000
MCYG_03026 Arthroderma otae MCYG_03026 N 0.000
ANIA_08753 Aspergillus nidulans CADANIAG00006313 N 0.000
AUEXF2481DRAFT_4163 Aureobasidium subglaciale AUEXF2481DRAFT_4163 N 0.000
BAUCODRAFT_36006 Baudoinia compniacensis BAUCODRAFT_36006 N 0.000
BDDG_05933 Blastomyces dermatitidis BDDG_05933 N 0.000
PVAR5_7542 Byssochlamys spectabilis PVAR5_7542 N 0.000
G647_04077 Cladophialophora carrionii G647_04077 N 0.000
CIMG_10021 Coccidioides immitis CIMG_10021 N 0.000
CPC735_011720 Coccidioides posadasii CPC735_011720 N 0.000
HMPREF1541_04290 Cyphellophora europaea HMPREF1541_04290 N 0.000
HCBG_02929 Histoplasma capsulatum HCBG_02929 N 0.000
LEMA_P041600.1 Leptosphaeria maculans LEMA_P041600.1 N 0.000
MCYG_03026 Microsporum canis MCYG_03026 N 0.000
MGYG_00199 Microsporum gypseum MGYG_00199 N 0.000
PABG_04273 Paracoccidioides brasiliensis PABG_04273 N 0.000
PAAG_04485 Paracoccidioides sp lutzii PAAG_04485 N 0.000
PTT_15581 Pyrenophora teres PTT_15581 N 0.000
PTRG_05599 Pyrenophora triticirepentis PTRG_05599 N 0.000
H102_08767 Trichophyton rubrum H102_08767 N 0.000
H105_08792 Trichophyton soudanense H105_08792 N 0.000
TESG_00800 Trichophyton tonsurans TESG_00800 N 0.000
TRV_01362 Trichophyton verrucosum TRV_01362 N 0.000
PV09_00049 Verruconis gallopava PV09_00049 N 0.000