CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29908.m006165
(
Ricinus communis
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
29908.m006165
T006733_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF014
M06581_2.00
Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR
Dap-seq
OMalley et al.(2016)
AT1G44830_col_a
0.796
1.000
ERF012
M06570_2.00
Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN
Dap-seq
OMalley et al.(2016)
DREB26_col_a
0.782
0.960
ERF013
M06601_2.00
Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g77640_col_a
0.763
0.960
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29908.m006165
AP2
29
80
KKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGS
Links
Other
AP2
family TFs
Other
Ricinus communis
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MCYG_07695
Microsporum canis
MCYG_07695
N
0.000
TESG_03492
Trichophyton tonsurans
TESG_03492
N
0.000
MPH_00638
Macrophomina phaseolina
MPH_00638
N
0.000
MGYG_05065
Microsporum gypseum
MGYG_05065
N
0.000
HMPREF1120_02123
Exophiala dermatitidis
HMPREF1120_02123
N
0.000
H105_06622
Trichophyton soudanense
H105_06622
N
0.000
H102_06585
Trichophyton rubrum
H102_06585
N
0.000
H101_01563
Trichophyton interdigitale
H101_01563
N
0.000
H072_9038
Dactylellina haptotyla
H072_9038
N
0.000
EURHEDRAFT_514859
Aspergillus ruber
EURHEDRAFT_514859
N
0.000
ARB_06468
Arthroderma benhamiae
ARB_06468
N
0.000
TRV_07088
Trichophyton verrucosum
TRV_07088
N
0.000