29938.m000611 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 29938.m000611 T006737_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF019
M01092_2.00
Arabidopsis thaliana
CRCCGRCV

BGYCGGYG
PBM
Lambert et al.(2019)
pTH11534
0.713 0.780
ERF019
M06571_2.00
Arabidopsis thaliana
HDYCACCGACAHNNN

NNNDTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a
0.713 0.780
ERF019
M06572_2.00
Arabidopsis thaliana
DYCACCGHCRHHDYC

GRHDDYGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g22810_col
0.713 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29938.m000611 AP2 13 64

Links

Other AP2 family TFs
Other Ricinus communis TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.808
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.799
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.799
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.791
Ca_15055 Cicer arietinum Ca_15055 I 0.787
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.787
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.787
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.787
Cla012182 Citrullus lanatus Cla012182 I 0.785
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.785
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.783
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.779
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.779
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.772
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.771
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.771
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.765
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.744
mgf010891m Mimulus guttatus mgf010891m I 0.742
Bo6g113060 Brassica oleracea Bo6g113060 I 0.732
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.731
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.729
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.728
MDP0000932292 Malus domestica MDP0000932292 N 0.727
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.726
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.726
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.726
TCM_036224 Theobroma cacao TCM_036224 I 0.726
Bra024539 Brassica rapa Bra024539 I 0.726
Bra012345 Brassica rapa Bra012345 I 0.726
ERF020 Arabidopsis thaliana AT1G71520 I 0.726
Bo5g038890 Brassica oleracea Bo5g038890 I 0.726
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.725
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.721
Bra007974 Brassica rapa Bra007974 I 0.719
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.719
Bo2g072950 Brassica oleracea Bo2g072950 I 0.719
Bo7g057680 Brassica oleracea Bo7g057680 I 0.718
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.714
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.714
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.713
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.713
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.713
ERF019 Arabidopsis thaliana AT1G22810 D 0.713
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.712
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.710
Pm004265 Prunus mume Pm004265 N 0.710
Bra016133 Brassica rapa Bra016133 I 0.710
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.700
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.694
OS01G0885900 Oryza sativa OS01G0885900 N 0.692
BGIOSGA004939 Oryza indica BGIOSGA004939 N 0.692
ORUFI01G43070 Oryza rufipogon ORUFI01G43070 N 0.692
ONIVA01G44590 Oryza nivara ONIVA01G44590 N 0.692
OGLUM01G43950 Oryza glumaepatula OGLUM01G43950 N 0.692
OMERI01G36600 Oryza meridionalis OMERI01G36600 N 0.692
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.689
Sb03g042060 Sorghum bicolor Sb03g042060 N 0.688
OB01G48490 Oryza brachyantha OB01G48490 N 0.686
GRMZM2G307152 Zea mays GRMZM2G307152 N 0.679
GSMUA_Achr10G04450_001 Musa acuminata GSMUA_Achr10G04450_001 N 0.678