cassava10604.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava10604.m1 T006791_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.819 0.940
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.819 0.940
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.797 0.880
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.797 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava10604.m1 AP2 25 76

Links

Other AP2 family TFs
Other Manihot esculenta TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF017 Arabidopsis thaliana AT1G19210 D 0.819
ERF018 Arabidopsis thaliana AT1G74930 D 0.797
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.763
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.725
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.796
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.819
29739.m003716 Ricinus communis 29739.m003716 I 0.795
29739.m003647 Ricinus communis 29739.m003647 I 0.789
Pm027117 Prunus mume Pm027117 I 0.795
Cla022291 Citrullus lanatus Cla022291 I 0.725
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.765
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.747
mgf021940m Mimulus guttatus mgf021940m I 0.795
mgf024162m Mimulus guttatus mgf024162m I 0.803
mgf025452m Mimulus guttatus mgf025452m I 0.786
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.812
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.699
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.763
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.797
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.794
Cla011318 Citrullus lanatus Cla011318 I 0.765
Cla007584 Citrullus lanatus Cla007584 I 0.768
Si008104m.g Setaria italica Si008104m.g I 0.734
Si015027m.g Setaria italica Si015027m.g I 0.686
Si019636m.g Setaria italica Si019636m.g I 0.767
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.729
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.774
TCM_037415 Theobroma cacao TCM_037415 I 0.809
TCM_037486 Theobroma cacao TCM_037486 I 0.793
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.679
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.715
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.746
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.805
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.814
Ca_01683 Cicer arietinum Ca_01683 I 0.788
Ca_09124 Cicer arietinum Ca_09124 I 0.789
Ca_19295 Cicer arietinum Ca_19295 I 0.738
Ca_19296 Cicer arietinum Ca_19296 I 0.732
Ca_19297 Cicer arietinum Ca_19297 I 0.734
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.789
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.819
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.763
MDP0000649022 Malus domestica MDP0000649022 I 0.786
MDP0000704216 Malus domestica MDP0000704216 I 0.798
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.787
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.767
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.686
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.686
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.768
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.818
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.820
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.787
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.820
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.803
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.754
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.778
PK18548.1 Cannabis sativa PK18548.1 I 0.746
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.753
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.802
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.801
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.782
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.819
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.789
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.787
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.800
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.789
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.749
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.789
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.816
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.824
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.789
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.797
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.736
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.789
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.787
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.766
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.801
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.782
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.737
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.777
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.677
F775_23111 Aegilops tauschii F775_23111 I 0.677
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.819
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.797
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.787
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.787
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.756
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.782
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.779
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.753
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.780
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.787
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.768
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.686
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.733
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.706
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.739
Bra031069 Brassica rapa Bra031069 I 0.804
Bra025719 Brassica rapa Bra025719 I 0.769
ERF016 Arabidopsis thaliana AT5G21960 I 0.757
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.721
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.683
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.686
Bo2g023630 Brassica oleracea Bo2g023630 I 0.779
Bo3g015600 Brassica oleracea Bo3g015600 I 0.764
Bo6g086740 Brassica oleracea Bo6g086740 I 0.789
Bo6g119120 Brassica oleracea Bo6g119120 I 0.797
Bo8g068370 Brassica oleracea Bo8g068370 I 0.803
Bo8g102870 Brassica oleracea Bo8g102870 I 0.804
Bo9g149820 Brassica oleracea Bo9g149820 I 0.763
Bra002377 Brassica rapa Bra002377 I 0.763
Bra003780 Brassica rapa Bra003780 I 0.789
Bra006599 Brassica rapa Bra006599 I 0.764
Bra015882 Brassica rapa Bra015882 I 0.800
Bra016518 Brassica rapa Bra016518 I 0.803
Bra020162 Brassica rapa Bra020162 I 0.778
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.757
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.686
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.724
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.683
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.686
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.721
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.686
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.721
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.683
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.721
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.683
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.686
OS02G0781300 Oryza sativa OS02G0781300 I 0.721
OS08G0454000 Oryza sativa OS08G0454000 I 0.686
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.774
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.729
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.784
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.796
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.820
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.804
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.721
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.683
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.798
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.790
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.790
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.704
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.736
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.736
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.750
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.755
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.755
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.695
OB08G24280 Oryza brachyantha OB08G24280 I 0.686
OBART06G06190 Oryza barthii OBART06G06190 I 0.683
OBART08G16950 Oryza barthii OBART08G16950 I 0.686
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.721
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.683
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.686
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.721
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.795