cassava12358.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava12358.valid.m1 T006799_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.856 0.980
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.828 0.929
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.825 0.929
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.810 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12358.valid.m1 AP2 156 205
cassava12358.valid.m1 AP2 248 299

Links

Other AP2 family TFs
Other Manihot esculenta TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29169.m000017 Ricinus communis 29169.m000017 I 0.872
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.871
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.871
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.869
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.863
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.857
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.857
Cla000716 Citrullus lanatus Cla000716 I 0.857
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.857
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.857
PK02403.1 Cannabis sativa PK02403.1 I 0.857
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.857
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.857
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.857
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.857
mgf009315m Mimulus guttatus mgf009315m I 0.857
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.857
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.857
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.857
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.857
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.857
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.857
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.856
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.856
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.856
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.856
Ca_09295 Cicer arietinum Ca_09295 I 0.856
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.856
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.856
29805.m001494 Ricinus communis 29805.m001494 I 0.856
Bra011741 Brassica rapa Bra011741 I 0.856
AP2 Arabidopsis thaliana AT4G36920 I 0.856
Bo1g004960 Brassica oleracea Bo1g004960 I 0.856
Bra017809 Brassica rapa Bra017809 I 0.856
Bo7g118400 Brassica oleracea Bo7g118400 I 0.856
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.856
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.856
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.856
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.855
TCM_000665 Theobroma cacao TCM_000665 I 0.854
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.854
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.854
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.851
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.850
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.850
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.849
TCM_022077 Theobroma cacao TCM_022077 I 0.849
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.849
MDP0000200319 Malus domestica MDP0000200319 I 0.849
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.849
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.849
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.849
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.849
Pm002492 Prunus mume Pm002492 I 0.849
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.849
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.849
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.849
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.848
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.848
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.848
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.848
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.848
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.848
OS05G0121600 Oryza sativa OS05G0121600 I 0.848
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.848
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.848
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.848
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.848
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.848
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.848
28752.m000339 Ricinus communis 28752.m000339 I 0.848
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.848
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.848
Ca_02499 Cicer arietinum Ca_02499 I 0.848
Si025305m.g Setaria italica Si025305m.g I 0.848
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.848
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.848
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.848
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.848
PK07183.1 Cannabis sativa PK07183.1 I 0.847
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.847
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.847
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.847
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.847
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.847
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.847
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.847
Si012635m.g Setaria italica Si012635m.g I 0.847
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.847
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.847
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.847
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.847
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.846
TCM_042000 Theobroma cacao TCM_042000 I 0.846
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.846
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.846
F775_32962 Aegilops tauschii F775_32962 I 0.846
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.846
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.846
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.846
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.845
mgf021945m Mimulus guttatus mgf021945m I 0.845
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.844
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.844
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.844
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.843
Cla018124 Citrullus lanatus Cla018124 I 0.843
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.843
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.843
MDP0000181606 Malus domestica MDP0000181606 I 0.843
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.843
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.843
Pm000974 Prunus mume Pm000974 I 0.843
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.842
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.842
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.841
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.841
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.841
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.841
Pm030172 Prunus mume Pm030172 I 0.841
MDP0000137561 Malus domestica MDP0000137561 I 0.840
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.840
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.840
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.836
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.835
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.835
OB06G29960 Oryza brachyantha OB06G29960 I 0.835
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.835
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.835
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.835
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.835
Ca_14618 Cicer arietinum Ca_14618 I 0.835
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.834
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.833
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.831
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.831
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.831
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.831
Ca_12010 Cicer arietinum Ca_12010 I 0.830
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.830
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.830
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.830
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.830
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.830
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.830
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.830
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.830
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.830
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.829
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.828
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.827
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.827
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.827
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.825
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.825
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.825
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.825
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.825
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.824
OS07G0235800 Oryza sativa OS07G0235800 I 0.824
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.824
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.824
OBART07G08110 Oryza barthii OBART07G08110 I 0.824
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.824
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.824
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.824
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.824
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.824
Bra011939 Brassica rapa Bra011939 I 0.824
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.824
Bo4g070350 Brassica oleracea Bo4g070350 I 0.824
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.824
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.824
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.823
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.823
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.822
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.822
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.822
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.822
mgf010466m Mimulus guttatus mgf010466m I 0.822
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.822
Si029636m.g Setaria italica Si029636m.g I 0.822
mgf005133m Mimulus guttatus mgf005133m I 0.822
OB03G45870 Oryza brachyantha OB03G45870 I 0.822
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.821
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.821
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.820
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.819
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.819
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.819
Si036068m.g Setaria italica Si036068m.g I 0.819
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.819
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.819
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.819
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.819
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.816
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.816
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.816
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.816
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.815
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.813
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.810
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.810
P93632_MAIZE Zea mays P93632_MAIZE D 0.810
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.808
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.808
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.807
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.807
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.807
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.807
TOE3 Arabidopsis thaliana AT5G67180 I 0.807
MDP0000163645 Malus domestica MDP0000163645 I 0.806
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.804
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.804
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.804
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.802
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.801
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.801
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.801
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.800
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.800
Bo7g064000 Brassica oleracea Bo7g064000 I 0.800
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.800
Bra012139 Brassica rapa Bra012139 I 0.800
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.796
Cla018549 Citrullus lanatus Cla018549 I 0.791
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.791
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.789
OS03G0818800 Oryza sativa OS03G0818800 I 0.787
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.784
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.784
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.783
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.783
Cla020549 Citrullus lanatus Cla020549 I 0.780
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.772
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.712
Si006371m.g Setaria italica Si006371m.g I 0.702
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.697
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.679
PK14490.1 Cannabis sativa PK14490.1 I 0.679