cassava13884.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava13884.valid.m1 T006802_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.812 0.898
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.798 0.878
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.796 0.898
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.766 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava13884.valid.m1 AP2 111 160
cassava13884.valid.m1 AP2 203 254

Links

Other AP2 family TFs
Other Manihot esculenta TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.822
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.822
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.819
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.819
Si025305m.g Setaria italica Si025305m.g I 0.819
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.819
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.819
OS05G0121600 Oryza sativa OS05G0121600 I 0.819
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.819
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.819
Ca_02499 Cicer arietinum Ca_02499 I 0.819
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.819
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.819
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.819
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.819
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.819
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.819
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.819
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.819
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.819
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.819
28752.m000339 Ricinus communis 28752.m000339 I 0.819
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.819
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.819
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.818
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.818
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.818
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.818
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.818
Pm002492 Prunus mume Pm002492 I 0.818
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.818
MDP0000200319 Malus domestica MDP0000200319 I 0.818
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.818
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.818
TCM_022077 Theobroma cacao TCM_022077 I 0.818
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.816
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.816
PK07183.1 Cannabis sativa PK07183.1 I 0.816
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.815
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.815
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.814
Pm000974 Prunus mume Pm000974 I 0.814
MDP0000181606 Malus domestica MDP0000181606 I 0.814
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.814
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.814
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.814
TCM_000665 Theobroma cacao TCM_000665 I 0.814
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.813
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.813
F775_32962 Aegilops tauschii F775_32962 I 0.813
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.813
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.813
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.813
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.813
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.813
TCM_042000 Theobroma cacao TCM_042000 I 0.813
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.812
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.812
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.812
Bra011741 Brassica rapa Bra011741 I 0.812
Bo7g118400 Brassica oleracea Bo7g118400 I 0.812
Ca_09295 Cicer arietinum Ca_09295 I 0.812
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.812
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.812
29805.m001494 Ricinus communis 29805.m001494 I 0.812
AP2 Arabidopsis thaliana AT4G36920 I 0.812
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.812
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.812
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.812
Bo1g004960 Brassica oleracea Bo1g004960 I 0.812
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.812
Bra017809 Brassica rapa Bra017809 I 0.812
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.811
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.811
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.811
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.811
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.811
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.811
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.811
PK02403.1 Cannabis sativa PK02403.1 I 0.811
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.811
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.811
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.811
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.811
Cla000716 Citrullus lanatus Cla000716 I 0.811
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.811
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.811
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.811
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.811
mgf009315m Mimulus guttatus mgf009315m I 0.810
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.810
mgf021945m Mimulus guttatus mgf021945m I 0.810
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.810
Si012635m.g Setaria italica Si012635m.g I 0.809
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.809
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.809
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.809
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.809
Cla018124 Citrullus lanatus Cla018124 I 0.809
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.809
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.809
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.809
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.809
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.809
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.809
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.809
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.809
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.809
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.808
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.805
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.802
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.802
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.801
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.801
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.801
29169.m000017 Ricinus communis 29169.m000017 I 0.800
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.800
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.800
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.800
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.800
Ca_12010 Cicer arietinum Ca_12010 I 0.799
OBART07G08110 Oryza barthii OBART07G08110 I 0.799
OS07G0235800 Oryza sativa OS07G0235800 I 0.799
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.799
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.799
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.799
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.799
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.799
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.799
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.799
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.799
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.799
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.799
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.798
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.798
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.798
Si036068m.g Setaria italica Si036068m.g I 0.797
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.797
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.797
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.797
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.797
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.797
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.797
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.796
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.796
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.796
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.796
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.796
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.796
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.796
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.796
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.796
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.796
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.796
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.796
Si029636m.g Setaria italica Si029636m.g I 0.796
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.795
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.795
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.795
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.795
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.795
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.795
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.795
MDP0000137561 Malus domestica MDP0000137561 I 0.795
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.795
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.795
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.794
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.794
Ca_14618 Cicer arietinum Ca_14618 I 0.794
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.794
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.794
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.794
Pm030172 Prunus mume Pm030172 I 0.794
Bo4g070350 Brassica oleracea Bo4g070350 I 0.794
Bra011939 Brassica rapa Bra011939 I 0.794
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.794
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.793
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.793
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.793
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.791
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.791
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.790
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.790
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.790
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.789
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.789
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.789
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.789
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.789
OB06G29960 Oryza brachyantha OB06G29960 I 0.789
OB03G45870 Oryza brachyantha OB03G45870 I 0.787
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.787
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.787
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.785
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.785
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.785
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.781
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.780
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.780
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.780
Cla018549 Citrullus lanatus Cla018549 I 0.779
MDP0000163645 Malus domestica MDP0000163645 I 0.778
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.778
mgf005133m Mimulus guttatus mgf005133m I 0.775
mgf010466m Mimulus guttatus mgf010466m I 0.775
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.775
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.775
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.775
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.774
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.770
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.767
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.767
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.766
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.766
P93632_MAIZE Zea mays P93632_MAIZE D 0.766
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.764
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.763
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.760
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.760
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.760
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.760
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.760
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.760
TOE3 Arabidopsis thaliana AT5G67180 I 0.760
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.759
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.758
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.758
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.756
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.755
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.755
Bo7g064000 Brassica oleracea Bo7g064000 I 0.754
Bra012139 Brassica rapa Bra012139 I 0.754
Cla020549 Citrullus lanatus Cla020549 I 0.750
OS03G0818800 Oryza sativa OS03G0818800 I 0.750
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.750
Si006371m.g Setaria italica Si006371m.g I 0.691