cassava15834.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava15834.m1 T006812_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.710 0.880
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.710 0.880
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.710 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15834.m1 AP2 38 89

Links

Other AP2 family TFs
Other Manihot esculenta TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.738
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.732
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.730
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.725
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.725
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.722
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.722
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.722
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.722
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.722
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.721
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.719
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.717
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.717
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.717
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.717
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.716
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.716
Bra018864 Brassica rapa Bra018864 I 0.715
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.713
PGSC0003DMG400013450 Solanum tuberosum PGSC0003DMG400013450 I 0.710
ERF7 Arabidopsis thaliana AT3G20310 D 0.710
Solyc03g005510.1 Solanum lycopersicum Solyc03g005510.1 I 0.710
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.708
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.698
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.697
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.696
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.696
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.690
Bra001784 Brassica rapa Bra001784 I 0.688
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.688
Bo3g074840 Brassica oleracea Bo3g074840 I 0.688
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.679
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.679
GSMUA_Achr3G23710_001 Musa acuminata GSMUA_Achr3G23710_001 I 0.678
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.678