cassava16956.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava16956.m1 T006817_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.812 0.940
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.806 0.820
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.799 0.800
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.779 0.860
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.779 0.860
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.779 0.860
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.768 0.760
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.768 0.760
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.759 0.900
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.759 0.900
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.757 0.760
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.757 0.760
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.757 0.760
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.746 0.740
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.737 0.720
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.737 0.720
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.737 0.720
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.726 0.760
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.722 0.720
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.722 0.720
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.722 0.720
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.718 0.720
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.710 0.700
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.710 0.720
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.710 0.720
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.709 0.740
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.709 0.740
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.709 0.740
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.706 0.700
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.706 0.700
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.706 0.700
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.706 0.720
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH

DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.705 0.780
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN

NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.705 0.780
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD

HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.705 0.780
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY

RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.705 0.780
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.703 0.720
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.700 0.700
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.696 0.680
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.695 0.720
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.690 0.700
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.690 0.700
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.689 0.660
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.689 0.660
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.687 0.640
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.683 0.640
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.681 0.720
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.679 0.680
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.679 0.680
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.679 0.680
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.677 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16956.m1 AP2 5 56

Links

Other AP2 family TFs
Other Manihot esculenta TFs

Invalid Input OrderBy

1490 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action