cassava17064.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava17064.m1 T006818_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.750 0.765
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.750 0.765
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.750 0.765
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.750 0.765
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.750 0.765
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.750 0.765
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.714 0.725
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.706 0.824
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.706 0.824
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.702 0.804
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.702 0.804
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.702 0.804
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.702 0.804
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.677 0.745
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.677 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava17064.m1 AP2 37 89

Links

Other AP2 family TFs
Other Manihot esculenta TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
60638.m00016 Ricinus communis 60638.m00016 I 0.817
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.808
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.789
MDP0000198054 Malus domestica MDP0000198054 I 0.785
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.782
Pm023775 Prunus mume Pm023775 I 0.775
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.775
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.775
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.775
MDP0000154764 Malus domestica MDP0000154764 I 0.774
Pm023772 Prunus mume Pm023772 I 0.770
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.768
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.766
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.764
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.764
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.764
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.764
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.764
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.762
Bra016763 Brassica rapa Bra016763 I 0.757
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.757
Bo01335s010 Brassica oleracea Bo01335s010 I 0.757
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.754
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.754
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.754
Pm023769 Prunus mume Pm023769 I 0.753
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.753
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.753
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.752
DREB1F Arabidopsis thaliana AT1G12610 D 0.750
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.750
Bra026963 Brassica rapa Bra026963 I 0.748
Bo8g108050 Brassica oleracea Bo8g108050 I 0.748
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.747
30190.m011119 Ricinus communis 30190.m011119 I 0.747
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.747
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.744
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.743
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.743
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.743
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.742
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.740
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.740
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.738
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.738
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.738
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.737
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.737
TCM_016175 Theobroma cacao TCM_016175 I 0.736
mgf017136m Mimulus guttatus mgf017136m I 0.734
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.734
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.733
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.732
mgf026642m Mimulus guttatus mgf026642m I 0.732
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.731
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.731
mgf019061m Mimulus guttatus mgf019061m I 0.731
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.730
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.728
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.728
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.728
Cla006315 Citrullus lanatus Cla006315 I 0.728
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.727
Cla011674 Citrullus lanatus Cla011674 I 0.727
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.727
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.726
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.726
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.725
PK23332.1 Cannabis sativa PK23332.1 I 0.725
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.725
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.724
Ca_08732 Cicer arietinum Ca_08732 I 0.723
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.717
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.717
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.716
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.716
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.716
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.716
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.715
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.714
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.714
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.714
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.712
30147.m014313 Ricinus communis 30147.m014313 I 0.711
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.709
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.708
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.706
Bo9g104770 Brassica oleracea Bo9g104770 I 0.706
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.706
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.706
Bra028290 Brassica rapa Bra028290 I 0.706
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.706
DREB1D Arabidopsis thaliana AT5G51990 D 0.706
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.706
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.703
30190.m011120 Ricinus communis 30190.m011120 I 0.703
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.703
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.703
DREB1A Arabidopsis thaliana AT4G25480 D 0.702
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.702
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.702
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.702
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.702
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.702
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.702
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.702
Bo5g016750 Brassica oleracea Bo5g016750 I 0.699
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.698
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.698
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.697
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.696
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.696
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.695
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.695
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.694
mgf026339m Mimulus guttatus mgf026339m I 0.694
Cla002362 Citrullus lanatus Cla002362 I 0.693
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.692
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.692
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.690
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.689
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.688
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.688
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.686
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.686
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.686
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.683
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.682
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.682
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.682
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.682
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.682
Lus10024491.g Linum usitatissimum Lus10024491.g N 0.679
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.679
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.678
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.678
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.678
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.678
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.678
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.677
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.677
DREB1G Oryza indica BGIOSGA008804 I 0.677
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.677
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.677
OBART02G27760 Oryza barthii OBART02G27760 I 0.677
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.677
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.677
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.677
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.677
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.677
DREB1G Oryza sativa OS02G0677300 D 0.677
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.677
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.677