cassava18871.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava18871.valid.m1 T006824_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.800 0.882
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.800 0.882
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.800 0.882
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.792 0.882
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.792 0.843
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.792 0.843
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.792 0.843
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.789 0.784
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.789 0.784
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.781 0.863
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.739 0.765
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.739 0.765
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.733 0.725
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.710 0.706
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.695 0.745
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.694 0.725
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.691 0.686
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.691 0.765
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.691 0.765
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.691 0.765
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.687 0.706
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.687 0.765
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.686 0.745
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.686 0.745
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.681 0.745
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.681 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18871.valid.m1 AP2 115 167

Links

Other AP2 family TFs
Other Manihot esculenta TFs

741 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29770.m000336 Ricinus communis 29770.m000336 I 0.000
30171.m000407 Ricinus communis 30171.m000407 I 0.000
30172.m000206 Ricinus communis 30172.m000206 I 0.000
AC233865.1_FG003 Zea mays AC233865.1_FG003 I 0.000
AMTR_s00037p00144010 Amborella trichopoda AMTR_s00037p00144010 I 0.000
AMTR_s00044p00058960 Amborella trichopoda AMTR_s00044p00058960 I 0.000
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I 0.000
ANAC020 Vitis vinifera VIT_19s0085g00950 I 0.000
ANAC020 Arabidopsis lyrata fgenesh2_kg.1__4648__AT1G54330.1 I 0.000
ANAC020 Populus trichocarpa POPTR_0008s08100 I 0.000
ANAC020 Arabidopsis thaliana AT1G54330 D 0.000
anac028 Arabidopsis lyrata Al_scaffold_0002_1137 I 0.000
anac028 Arabidopsis thaliana AT1G65910 D 0.000
anac045 Arabidopsis lyrata Al_scaffold_0003_260 I 0.000
anac057 Vitis vinifera VIT_17s0053g00740 I 0.000
anac057 Arabidopsis thaliana AT3G17730 D 0.000
anac057 Arabidopsis lyrata Al_scaffold_0003_1866 I 0.000
anac057 Populus trichocarpa POPTR_0012s03510 I 0.000
anac086 Arabidopsis lyrata fgenesh2_kg.6__1724__AT5G17260.1 I 0.000
Aquca_002_01357 Aquilegia coerulea Aquca_002_01357 I 0.000
Aquca_002_01358 Aquilegia coerulea Aquca_002_01358 I 0.000
Aquca_044_00122 Aquilegia coerulea Aquca_044_00122 I 0.000
BGIOSGA011734 Oryza indica BGIOSGA011734 I 0.000
BGIOSGA031229 Oryza indica BGIOSGA031229 I 0.000
Bo1g154830 Brassica oleracea Bo1g154830 I 0.000
Bo2g052630 Brassica oleracea Bo2g052630 I 0.000
Bo3g012450 Brassica oleracea Bo3g012450 I 0.000
Bo3g185870 Brassica oleracea Bo3g185870 I 0.000
Bo5g122710 Brassica oleracea Bo5g122710 I 0.000
Bo5g150170 Brassica oleracea Bo5g150170 I 0.000
Bo6g036040 Brassica oleracea Bo6g036040 I 0.000
Bo9g161440 Brassica oleracea Bo9g161440 I 0.000
Bostr.19046s0031 Boechera stricta Bostr.19046s0031 I 0.000
Bostr.19424s0897 Boechera stricta Bostr.19424s0897 I 0.000
Bostr.2618s0061 Boechera stricta Bostr.2618s0061 I 0.000
Bostr.26959s0323 Boechera stricta Bostr.26959s0323 I 0.000
Bostr.6758s0078 Boechera stricta Bostr.6758s0078 I 0.000
Bra003335 Brassica rapa Bra003335 I 0.000
Bra006392 Brassica rapa Bra006392 I 0.000
Bra008567 Brassica rapa Bra008567 I 0.000
Bra021366 Brassica rapa Bra021366 I 0.000
Bra022236 Brassica rapa Bra022236 I 0.000
Bra030807 Brassica rapa Bra030807 I 0.000
Bra032009 Brassica rapa Bra032009 I 0.000
Bra039745 Brassica rapa Bra039745 I 0.000
BRADI1G77217 Brachypodium distachyon BRADI1G77217 I 0.000
Cagra.11446s0003 Capsella grandiflora Cagra.11446s0003 I 0.000
Cagra.1310s0016 Capsella grandiflora Cagra.1310s0016 I 0.000
Cagra.1378s0012 Capsella grandiflora Cagra.1378s0012 I 0.000
Cagra.2098s0066 Capsella grandiflora Cagra.2098s0066 I 0.000
Cagra.4849s0008 Capsella grandiflora Cagra.4849s0008 I 0.000
Carubv10003869m.g Capsella rubella Carubv10003869m.g I 0.000
Carubv10012163m.g Capsella rubella Carubv10012163m.g I 0.000
Carubv10013584m.g Capsella rubella Carubv10013584m.g I 0.000
Carubv10014426m.g Capsella rubella Carubv10014426m.g I 0.000
Carubv10021788m.g Capsella rubella Carubv10021788m.g I 0.000
cassava20891.m1 Manihot esculenta cassava20891.m1 I 0.000
cassava30278.valid.m1 Manihot esculenta cassava30278.valid.m1 I 0.000
cassava38739.m1 Manihot esculenta cassava38739.m1 I 0.000
cassava4611.m1 Manihot esculenta cassava4611.m1 I 0.000
Ca_13258 Cicer arietinum Ca_13258 I 0.000
Ca_14390 Cicer arietinum Ca_14390 I 0.000
Ca_18034 Cicer arietinum Ca_18034 I 0.000
Ca_23537 Cicer arietinum Ca_23537 I 0.000
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I 0.000
Ciclev10005341m.g Citrus clementina Ciclev10005341m.g I 0.000
Ciclev10011293m.g Citrus clementina Ciclev10011293m.g I 0.000
Ciclev10024520m.g Citrus clementina Ciclev10024520m.g I 0.000
Cla009281 Citrullus lanatus Cla009281 I 0.000
Cla013653 Citrullus lanatus Cla013653 I 0.000
Cla018917 Citrullus lanatus Cla018917 I 0.000
Cucsa.112500 Cucumis sativus Cucsa.112500 I 0.000
Cucsa.118620 Cucumis sativus Cucsa.118620 I 0.000
Cucsa.173670 Cucumis sativus Cucsa.173670 I 0.000
Eucgr.F02910 Eucalyptus grandis Eucgr.F02910 I 0.000
Eucgr.H00614 Eucalyptus grandis Eucgr.H00614 I 0.000
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.000
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.000
evm.TU.supercontig_178.32 Carica papaya evm.TU.supercontig_178.32 I 0.000
evm.TU.supercontig_38.43 Carica papaya evm.TU.supercontig_38.43 I 0.000
F775_13960 Aegilops tauschii F775_13960 I 0.000
F775_13961 Aegilops tauschii F775_13961 I 0.000
F775_22879 Aegilops tauschii F775_22879 I 0.000
gene09293-v1.0-hybrid Fragaria vesca gene09293-v1.0-hybrid I 0.000
gene19716-v1.0-hybrid Fragaria vesca gene19716-v1.0-hybrid I 0.000
gene31658-v1.0-hybrid Fragaria vesca gene31658-v1.0-hybrid I 0.000
GLYMA02G40750 Glycine max GLYMA02G40750 I 0.000
GLYMA08G17351 Glycine max GLYMA08G17351 I 0.000
GLYMA09G29760 Glycine max GLYMA09G29760 I 0.000
GLYMA11G33210 Glycine max GLYMA11G33210 I 0.000
GLYMA14G39080 Glycine max GLYMA14G39080 I 0.000
GLYMA15G41825 Glycine max GLYMA15G41825 I 0.000
GLYMA16G34310 Glycine max GLYMA16G34310 I 0.000
GLYMA18G05020 Glycine max GLYMA18G05020 I 0.000
Gorai.001G070700 Gossypium raimondii Gorai.001G070700 I 0.000
Gorai.004G048200 Gossypium raimondii Gorai.004G048200 I 0.000
Gorai.004G268400 Gossypium raimondii Gorai.004G268400 I 0.000
Gorai.006G189600 Gossypium raimondii Gorai.006G189600 I 0.000
Gorai.007G188800 Gossypium raimondii Gorai.007G188800 I 0.000
Gorai.013G146300 Gossypium raimondii Gorai.013G146300 I 0.000
GRMZM2G174070 Zea mays GRMZM2G174070 I 0.000
GRMZM2G406204 Zea mays GRMZM2G406204 I 0.000
GSMUA_Achr11G01400_001 Musa acuminata GSMUA_Achr11G01400_001 I 0.000
GSMUA_Achr1G02820_001 Musa acuminata GSMUA_Achr1G02820_001 I 0.000
GSMUA_Achr3G13880_001 Musa acuminata GSMUA_Achr3G13880_001 I 0.000
GSMUA_Achr8G13430_001 Musa acuminata GSMUA_Achr8G13430_001 I 0.000
GSMUA_Achr9G23940_001 Musa acuminata GSMUA_Achr9G23940_001 I 0.000
GSMUA_AchrUn_randomG08190_001 Musa acuminata GSMUA_AchrUn_randomG08190_001 I 0.000
LPERR03G01480 Leersia perrieri LPERR03G01480 I 0.000
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.000
LPERR09G14740 Leersia perrieri LPERR09G14740 I 0.000
Lus10007377.g Linum usitatissimum Lus10007377.g I 0.000
Lus10020794.g Linum usitatissimum Lus10020794.g I 0.000
Lus10026373.g Linum usitatissimum Lus10026373.g I 0.000
Lus10042284.g Linum usitatissimum Lus10042284.g I 0.000
MDP0000199840 Malus domestica MDP0000199840 I 0.000
MDP0000204582 Malus domestica MDP0000204582 I 0.000
MDP0000276982 Malus domestica MDP0000276982 I 0.000
MDP0000387787 Malus domestica MDP0000387787 I 0.000
MDP0000520807 Malus domestica MDP0000520807 I 0.000
MDP0000656113 Malus domestica MDP0000656113 I 0.000
mgf009479m Mimulus guttatus mgf009479m I 0.000
mgf025206m Mimulus guttatus mgf025206m I 0.000
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.000
MLOC_37844 Hordeum vulgare MLOC_37844 I 0.000
MLOC_71128 Hordeum vulgare MLOC_71128 I 0.000
MTR_2g064090 Medicago truncatula MTR_2g064090 I 0.000
MTR_3g064580 Medicago truncatula MTR_3g064580 I 0.000
MTR_5g076850 Medicago truncatula MTR_5g076850 I 0.000
MTR_6g477900 Medicago truncatula MTR_6g477900 I 0.000
NAC045 Arabidopsis thaliana AT3G03200 D 0.000
NAC086 Arabidopsis thaliana AT5G17260 I 0.000
OB03G11530 Oryza brachyantha OB03G11530 I 0.000
OB09G25570 Oryza brachyantha OB09G25570 I 0.000
OBART03G01580 Oryza barthii OBART03G01580 I 0.000
OGLUM03G01540 Oryza glumaepatula OGLUM03G01540 I 0.000
OGLUM09G19470 Oryza glumaepatula OGLUM09G19470 I 0.000
OLONG_013792 Oryza longistaminata OLONG_013792 I 0.000
OMERI03G01540 Oryza meridionalis OMERI03G01540 I 0.000
OMERI09G14160 Oryza meridionalis OMERI09G14160 I 0.000
ONIVA09G11670 Oryza nivara ONIVA09G11670 I 0.000
ONIVA09G20110 Oryza nivara ONIVA09G20110 I 0.000
OPUNC03G01460 Oryza punctata OPUNC03G01460 I 0.000
orange1.1g007938m.g Citrus sinensis orange1.1g007938m.g I 0.000
orange1.1g036998m.g Citrus sinensis orange1.1g036998m.g I 0.000
orange1.1g040617m.g Citrus sinensis orange1.1g040617m.g I 0.000
ORGLA03G0013500 Oryza glaberrima ORGLA03G0013500 I 0.000
ORGLA09G0151700 Oryza glaberrima ORGLA09G0151700 I 0.000
ORUFI03G01320 Oryza rufipogon ORUFI03G01320 I 0.000
OS03G0119966 Oryza sativa OS03G0119966 I 0.000
OS09G0552800 Oryza sativa OS09G0552800 I 0.000
Pavir.Ba01384 Panicum virgatum Pavir.Ba01384 I 0.000
Pavir.Bb02627 Panicum virgatum Pavir.Bb02627 I 0.000
Pavir.Ia04558 Panicum virgatum Pavir.Ia04558 I 0.000
Pavir.Ib00051 Panicum virgatum Pavir.Ib00051 I 0.000
PDK_20s1433691g002 Phoenix dactylifera PDK_20s1433691g002 I 0.000
PGSC0003DMG400021474 Solanum tuberosum PGSC0003DMG400021474 I 0.000
PGSC0003DMG400031054 Solanum tuberosum PGSC0003DMG400031054 I 0.000
PK03341.1 Cannabis sativa PK03341.1 I 0.000
PK19314.1 Cannabis sativa PK19314.1 D 0.000
PK26618.1 Cannabis sativa PK26618.1 D 0.000
Pm010926 Prunus mume Pm010926 I 0.000
Pm012993 Prunus mume Pm012993 I 0.000
POPTR_0004s07910 Populus trichocarpa POPTR_0004s07910 I 0.000
POPTR_0010s18180 Populus trichocarpa POPTR_0010s18180 I 0.000
POPTR_0015s05450 Populus trichocarpa POPTR_0015s05450 I 0.000
POPTR_0017s02020 Populus trichocarpa POPTR_0017s02020 I 0.000
PRUPE_ppa002384mg Prunus persica PRUPE_ppa002384mg I 0.000
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.000
SapurV1A.0074s0150 Salix purpurea SapurV1A.0074s0150 I 0.000
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.000
SapurV1A.0147s0010 Salix purpurea SapurV1A.0147s0010 I 0.000
SapurV1A.0149s0500 Salix purpurea SapurV1A.0149s0500 I 0.000
SapurV1A.0202s0410 Salix purpurea SapurV1A.0202s0410 I 0.000
SapurV1A.0549s0150 Salix purpurea SapurV1A.0549s0150 I 0.000
SapurV1A.1584s0060 Salix purpurea SapurV1A.1584s0060 I 0.000
SapurV1A.2754s0020 Salix purpurea SapurV1A.2754s0020 I 0.000
Sb01g049240 Sorghum bicolor Sb01g049240 I 0.000
Sb02g032220 Sorghum bicolor Sb02g032220 I 0.000
Si033085m.g Setaria italica Si033085m.g I 0.000
Si034541m.g Setaria italica Si034541m.g I 0.000
Solyc02g036430.1 Solanum lycopersicum Solyc02g036430.1 I 0.000
Solyc02g081270.2 Solanum lycopersicum Solyc02g081270.2 I 0.000
Solyc03g098190.2 Solanum lycopersicum Solyc03g098190.2 I 0.000
TCM_017681 Theobroma cacao TCM_017681 I 0.000
TCM_033629 Theobroma cacao TCM_033629 I 0.000
TCM_044911 Theobroma cacao TCM_044911 I 0.000
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.000
Thhalv10013344m.g Eutrema salsugineum Thhalv10013344m.g I 0.000
Thhalv10018275m.g Eutrema salsugineum Thhalv10018275m.g I 0.000
Thhalv10021408m.g Eutrema salsugineum Thhalv10021408m.g I 0.000
Thhalv10022055m.g Eutrema salsugineum Thhalv10022055m.g I 0.000
Thhalv10023058m.g Eutrema salsugineum Thhalv10023058m.g I 0.000
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I 0.000
Traes_4BL_D592DBAAF Triticum aestivum Traes_4BL_D592DBAAF I 0.000
Traes_4DL_A13AE4BE6 Triticum aestivum Traes_4DL_A13AE4BE6 I 0.000
Traes_5AL_59A8F0CBD Triticum aestivum Traes_5AL_59A8F0CBD I 0.000
Traes_5BL_581C3F5DA Triticum aestivum Traes_5BL_581C3F5DA I 0.000
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.000
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.000
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.000
TRIUR3_13806 Triticum urartu TRIUR3_13806 I 0.000
VIT_04s0079g00280 Vitis vinifera VIT_04s0079g00280 I 0.000