cassava19475.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava19475.valid.m1 T006830_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.780 0.918
Q8H769_WHEAT
M09721_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.729 0.857
Q1ESI9_MAIZE
M09714_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB2A_02
0.699 0.816
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.698 0.776
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.694 0.796
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.694 0.796
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.694 0.796
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN

NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.677 0.816
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD

HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.677 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19475.valid.m1 AP2 80 131

Links

Other AP2 family TFs
Other Manihot esculenta TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.814
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.805
29729.m002292 Ricinus communis 29729.m002292 I 0.802
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.799
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.799
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.796
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.796
PK07402.1 Cannabis sativa PK07402.1 D 0.780
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.772
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.772
Cla006713 Citrullus lanatus Cla006713 I 0.771
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.769
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.769
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.767
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.765
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.757
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.757
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.755
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.753
Bra017011 Brassica rapa Bra017011 I 0.752
Bo4g190040 Brassica oleracea Bo4g190040 I 0.752
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.751
TCM_043275 Theobroma cacao TCM_043275 I 0.749
Pm015262 Prunus mume Pm015262 I 0.748
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.748
MDP0000290585 Malus domestica MDP0000290585 I 0.747
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.745
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.744
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.743
MDP0000446783 Malus domestica MDP0000446783 I 0.740
MDP0000147009 Malus domestica MDP0000147009 I 0.740
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.739
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.739
Pm018989 Prunus mume Pm018989 I 0.739
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.739
MDP0000165880 Malus domestica MDP0000165880 I 0.737
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.736
MDP0000153866 Malus domestica MDP0000153866 I 0.736
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.735
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.735
TCM_043306 Theobroma cacao TCM_043306 I 0.733
TCM_043302 Theobroma cacao TCM_043302 I 0.733
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.732
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.731
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.730
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.730
Pm003634 Prunus mume Pm003634 I 0.729
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.729
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.729
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.729
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.729
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.729
F775_05774 Aegilops tauschii F775_05774 I 0.729
OBART01G04210 Oryza barthii OBART01G04210 I 0.728
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.728
OB01G13930 Oryza brachyantha OB01G13930 I 0.728
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.728
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.728
DREB2A Oryza sativa OS01G0165000 I 0.728
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.728
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.728
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.728
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.728
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.728
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.728
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.727
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.726
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.724
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.722
Si002067m.g Setaria italica Si002067m.g I 0.721
Ca_12446 Cicer arietinum Ca_12446 I 0.719
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.719
mgf007881m Mimulus guttatus mgf007881m I 0.718
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.718
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.717
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.717
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.716
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.715
MDP0000880312 Malus domestica MDP0000880312 I 0.715
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.714
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.713
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.713
Cla001755 Citrullus lanatus Cla001755 I 0.713
MDP0000250924 Malus domestica MDP0000250924 I 0.712
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.710
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.710
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.709
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.708
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.707
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.707
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.707
Cla021113 Citrullus lanatus Cla021113 I 0.705
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.705
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.705
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.705
F775_32062 Aegilops tauschii F775_32062 I 0.705
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.705
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.704
MDP0000250927 Malus domestica MDP0000250927 I 0.704
GLYMA02G42960 Glycine max GLYMA02G42960 I 0.704
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.704
GLYMA14G06080 Glycine max GLYMA14G06080 I 0.704
Bo9g177130 Brassica oleracea Bo9g177130 I 0.703
Cla012194 Citrullus lanatus Cla012194 I 0.703
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.702
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.702
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.702
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.702
Pm006274 Prunus mume Pm006274 I 0.702
Ca_10770 Cicer arietinum Ca_10770 I 0.702
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.702
PK07829.1 Cannabis sativa PK07829.1 I 0.701
mgf017629m Mimulus guttatus mgf017629m I 0.700
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.700
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.700
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.700
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.699
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.699
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.699
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.699
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.699
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.699
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.699
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.698
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.698
Bra002159 Brassica rapa Bra002159 I 0.698
Bo9g155940 Brassica oleracea Bo9g155940 I 0.698
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.698
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.698
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.698
DREB2G Arabidopsis thaliana AT5G18450 D 0.698
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.698
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.697
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.697
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.697
30170.m014115 Ricinus communis 30170.m014115 I 0.697
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.697
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.696
Bra008200 Brassica rapa Bra008200 I 0.696
AT2G40350 Arabidopsis thaliana AT2G40350 I 0.696
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.696
Bo2g083920 Brassica oleracea Bo2g083920 I 0.696
mgf024545m Mimulus guttatus mgf024545m I 0.696
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.695
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.694
Bra015840 Brassica rapa Bra015840 I 0.694
Bo6g119660 Brassica oleracea Bo6g119660 I 0.694
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.694
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.694
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.694
DREB2D Arabidopsis thaliana AT1G75490 D 0.694
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.694
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.694
Bo6g086320 Brassica oleracea Bo6g086320 I 0.694
Bra003752 Brassica rapa Bra003752 I 0.694
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.693
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.693
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.693
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.693
TCM_034132 Theobroma cacao TCM_034132 I 0.693
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.693
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.692
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.692
Si022619m.g Setaria italica Si022619m.g I 0.692
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.691
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.691
MDP0000141335 Malus domestica MDP0000141335 I 0.690
MDP0000295902 Malus domestica MDP0000295902 I 0.690
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.688
Ca_22585 Cicer arietinum Ca_22585 I 0.688
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.685
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.685
Bra028759 Brassica rapa Bra028759 I 0.682
Bo2g006960 Brassica oleracea Bo2g006960 I 0.682
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.681
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.680
TCM_026121 Theobroma cacao TCM_026121 I 0.679
Bra023674 Brassica rapa Bra023674 I 0.678
Bo2g016490 Brassica oleracea Bo2g016490 I 0.678
29680.m001737 Ricinus communis 29680.m001737 I 0.677
DREB2A Arabidopsis thaliana AT5G05410 D 0.677