CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava20547.m1
(
Manihot esculenta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
cassava20547.m1
T006839_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.810
0.920
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.810
0.920
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.788
0.860
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.788
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava20547.m1
AP2
23
74
PKYKGVRKRKWGKWVSEIRLPNSRERIWLGSFDTAEKAALAFDAALYCLRGR
Links
Other
AP2
family TFs
Other
Manihot esculenta
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.819
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.815
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.812
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.812
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.812
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.810
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.810
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.810
ERF017
Arabidopsis thaliana
AT1G19210
D
0.810
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.809
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.807
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.805
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.803
TCM_037415
Theobroma cacao
TCM_037415
I
0.800
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.796
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.795
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.795
Bra031069
Brassica rapa
Bra031069
I
0.795
mgf024162m
Mimulus guttatus
mgf024162m
I
0.794
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.794
Bra016518
Brassica rapa
Bra016518
I
0.794
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.794
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.793
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.792
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.792
Ciclev10010348m.g
Citrus clementina
Ciclev10010348m.g
I
0.792
Bra015882
Brassica rapa
Bra015882
I
0.791
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.789
MDP0000704216
Malus domestica
MDP0000704216
I
0.789
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.788
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.788
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.788
ERF018
Arabidopsis thaliana
AT1G74930
D
0.788
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.788
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.787
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.787
29739.m003716
Ricinus communis
29739.m003716
I
0.786
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.786
Pm027117
Prunus mume
Pm027117
I
0.786
mgf021940m
Mimulus guttatus
mgf021940m
I
0.786
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.785
TCM_037486
Theobroma cacao
TCM_037486
I
0.784
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.784
MTR_1g014820
Medicago truncatula
MTR_1g014820
I
0.781
MTR_1g014860
Medicago truncatula
MTR_1g014860
I
0.781
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.780
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.780
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.780
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.780
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.780
Ca_09124
Cicer arietinum
Ca_09124
I
0.780
29739.m003647
Ricinus communis
29739.m003647
I
0.780
Ca_01683
Cicer arietinum
Ca_01683
I
0.780
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.780
Bra003780
Brassica rapa
Bra003780
I
0.780
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.780
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.778
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.778
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.778
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.778
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.778
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.778
GLYMA17G33535
Glycine max
GLYMA17G33535
I
0.778
MDP0000649022
Malus domestica
MDP0000649022
I
0.777
mgf025452m
Mimulus guttatus
mgf025452m
I
0.777
GLYMA13G17250
Glycine max
GLYMA13G17250
I
0.773
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.773
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.773
GLYMA17G05240
Glycine max
GLYMA17G05240
I
0.772
Bo2g023630
Brassica oleracea
Bo2g023630
I
0.770
GLYMA14G12505
Glycine max
GLYMA14G12505
I
0.770
Solyc12g009240.1
Solanum lycopersicum
Solyc12g009240.1
I
0.769
PGSC0003DMG400002899
Solanum tuberosum
PGSC0003DMG400002899
I
0.769
Thhalv10019652m.g
Eutrema salsugineum
Thhalv10019652m.g
I
0.769
Bra020162
Brassica rapa
Bra020162
I
0.769
AMTR_s00007p00268280
Amborella trichopoda
AMTR_s00007p00268280
I
0.768
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.760
Bra025719
Brassica rapa
Bra025719
I
0.760
Cla007584
Citrullus lanatus
Cla007584
I
0.759
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.759
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.758
Si019636m.g
Setaria italica
Si019636m.g
I
0.758
Gorai.013G222700
Gossypium raimondii
Gorai.013G222700
I
0.757
Cla011318
Citrullus lanatus
Cla011318
I
0.756
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.756
Bra006599
Brassica rapa
Bra006599
I
0.755
Bo3g015600
Brassica oleracea
Bo3g015600
I
0.755
Bo9g149820
Brassica oleracea
Bo9g149820
I
0.754
Carubv10001903m.g
Capsella rubella
Carubv10001903m.g
I
0.754
Bra002377
Brassica rapa
Bra002377
I
0.754
scaffold_602234.1
Arabidopsis lyrata
scaffold_602234.1
I
0.754
Bostr.26527s0082
Boechera stricta
Bostr.26527s0082
I
0.754
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.750
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.750
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.748
ERF016
Arabidopsis thaliana
AT5G21960
I
0.748
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.747
Thhalv10015465m.g
Eutrema salsugineum
Thhalv10015465m.g
I
0.745
chr1.CM0133.1010.nc
Lotus japonicus
chr1.CM0133.1010.nc
I
0.745
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.744
MTR_2g043050
Medicago truncatula
MTR_2g043050
I
0.741
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.740
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.738
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.737
PK18548.1
Cannabis sativa
PK18548.1
I
0.737
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.730
Ca_19295
Cicer arietinum
Ca_19295
I
0.729
chr6.CM0420.30.nd
Lotus japonicus
chr6.CM0420.30.nd
I
0.728
MTR_2g043040
Medicago truncatula
MTR_2g043040
I
0.727
Gorai.004G285200
Gossypium raimondii
Gorai.004G285200
I
0.727
MTR_2g043030
Medicago truncatula
MTR_2g043030
I
0.727
Ca_19297
Cicer arietinum
Ca_19297
I
0.725
Si008104m.g
Setaria italica
Si008104m.g
I
0.725
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.724
Ca_19296
Cicer arietinum
Ca_19296
I
0.723
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.720
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.720
Cucsa.055920
Cucumis sativus
Cucsa.055920
I
0.717
Cla022291
Citrullus lanatus
Cla022291
I
0.717
MTR_1g014780
Medicago truncatula
MTR_1g014780
I
0.715
OPUNC02G32160
Oryza punctata
OPUNC02G32160
I
0.712
ONIVA02G36910
Oryza nivara
ONIVA02G36910
I
0.712
OGLUM02G35980
Oryza glumaepatula
OGLUM02G35980
I
0.712
BGIOSGA005486
Oryza indica
BGIOSGA005486
I
0.712
OMERI01G37050
Oryza meridionalis
OMERI01G37050
I
0.712
ORGLA02G0301600
Oryza glaberrima
ORGLA02G0301600
I
0.712
OS02G0781300
Oryza sativa
OS02G0781300
I
0.712
ORUFI02G36340
Oryza rufipogon
ORUFI02G36340
I
0.712
Traes_6AL_E6DAE246D
Triticum aestivum
Traes_6AL_E6DAE246D
I
0.706
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.697
MTR_2g043020
Medicago truncatula
MTR_2g043020
I
0.695
Aquca_076_00040
Aquilegia coerulea
Aquca_076_00040
I
0.690
MTR_7g028925
Medicago truncatula
MTR_7g028925
I
0.686
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.685
Si015027m.g
Setaria italica
Si015027m.g
I
0.677
OB08G24280
Oryza brachyantha
OB08G24280
I
0.677
OBART08G16950
Oryza barthii
OBART08G16950
I
0.677
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.677
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.677
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.677
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.677
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.677
Pavir.Fa00741
Panicum virgatum
Pavir.Fa00741
I
0.677
OS08G0454000
Oryza sativa
OS08G0454000
I
0.677
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.677
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.677
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.677