cassava25887.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava25887.m1 T006865_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.737 0.837
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.709 0.816
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.709 0.816
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.709 0.816
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.684 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava25887.m1 AP2 31 82

Links

Other AP2 family TFs
Other Manihot esculenta TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29680.m001737 Ricinus communis 29680.m001737 I 0.803
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.745
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.744
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.744
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.739
DREB2G Arabidopsis thaliana AT5G18450 D 0.737
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.737
Bo9g155940 Brassica oleracea Bo9g155940 I 0.737
Bra002159 Brassica rapa Bra002159 I 0.737
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.737
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.737
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.734
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.731
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.730
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.730
mgf024545m Mimulus guttatus mgf024545m I 0.729
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.729
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.729
Pm006274 Prunus mume Pm006274 I 0.728
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.728
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.726
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.725
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.725
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.725
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.725
Cla021113 Citrullus lanatus Cla021113 I 0.725
Ca_10770 Cicer arietinum Ca_10770 I 0.725
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.724
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.724
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.724
30170.m014115 Ricinus communis 30170.m014115 I 0.724
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.724
TCM_034132 Theobroma cacao TCM_034132 I 0.723
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.723
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.723
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.723
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.722
Pm003634 Prunus mume Pm003634 I 0.720
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.717
Bra006460 Brassica rapa Bra006460 I 0.717
Bra023674 Brassica rapa Bra023674 I 0.717
Bo3g013160 Brassica oleracea Bo3g013160 I 0.717
Bo2g016490 Brassica oleracea Bo2g016490 I 0.717
MDP0000250924 Malus domestica MDP0000250924 I 0.716
Bo2g083920 Brassica oleracea Bo2g083920 I 0.714
Bra008200 Brassica rapa Bra008200 I 0.714
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.713
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.711
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.710
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.710
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.709
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.709
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.709
Bra015840 Brassica rapa Bra015840 I 0.709
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.709
Bo6g119660 Brassica oleracea Bo6g119660 I 0.709
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.709
DREB2D Arabidopsis thaliana AT1G75490 D 0.709
MDP0000141335 Malus domestica MDP0000141335 I 0.708
MDP0000295902 Malus domestica MDP0000295902 I 0.708
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.707
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.707
mgf017629m Mimulus guttatus mgf017629m I 0.707
Bra003752 Brassica rapa Bra003752 I 0.706
Bo6g086320 Brassica oleracea Bo6g086320 I 0.706
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.703
MDP0000250927 Malus domestica MDP0000250927 I 0.700
TCM_026121 Theobroma cacao TCM_026121 I 0.698
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.692
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.691
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.690
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.690
Cla022803 Citrullus lanatus Cla022803 I 0.689
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.689
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.688
MDP0000880312 Malus domestica MDP0000880312 I 0.686
PK07402.1 Cannabis sativa PK07402.1 D 0.684
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.683
29729.m002292 Ricinus communis 29729.m002292 I 0.683
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.681
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.681
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.680
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.680
Bo6g073020 Brassica oleracea Bo6g073020 I 0.680
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.679
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.679
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.679
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.678
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.678
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.678
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.678
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.677