cassava28630.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava28630.m1 T006872_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.718 0.776
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.718 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28630.m1 AP2 1 50

Links

Other AP2 family TFs
Other Manihot esculenta TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02727 Aegilops tauschii F775_02727 I 0.727
F775_04303 Aegilops tauschii F775_04303 I 0.689
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.715
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.694
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.719
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.797
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.744
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.714
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.689
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.728
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.718
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.718
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.718
Bo9g152440 Brassica oleracea Bo9g152440 I 0.718
Bo2g018360 Brassica oleracea Bo2g018360 I 0.718
Bo3g013830 Brassica oleracea Bo3g013830 I 0.718
Bra006518 Brassica rapa Bra006518 I 0.718
Bra002262 Brassica rapa Bra002262 I 0.718
Bra020063 Brassica rapa Bra020063 I 0.718
PK13330.1 Cannabis sativa PK13330.1 I 0.727
PK25269.1 Cannabis sativa PK25269.1 I 0.762
PK28640.1 Cannabis sativa PK28640.1 I 0.690
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.718
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.718
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.727
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.718
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.730
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.778
Ca_10494 Cicer arietinum Ca_10494 I 0.727
Ca_25424 Cicer arietinum Ca_25424 I 0.727
Ca_16397 Cicer arietinum Ca_16397 I 0.772
Ca_08232 Cicer arietinum Ca_08232 I 0.718
Ca_00417 Cicer arietinum Ca_00417 I 0.720
Cla012318 Citrullus lanatus Cla012318 I 0.704
Cla010474 Citrullus lanatus Cla010474 I 0.728
Cla021590 Citrullus lanatus Cla021590 I 0.778
Cla005054 Citrullus lanatus Cla005054 N 0.707
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.730
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.804
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.733
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.682
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.727
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.704
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.727
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.733
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.704
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.804
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.682
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.704
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.730
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.778
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.704
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.728
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.707
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.701
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.710
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.731
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.714
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.718
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.704
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.804
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.718
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.727
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.696
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.680
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.772
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.699
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.727
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.718
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.727
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.718
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.727
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.772
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.727
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.696
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.700
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.718
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.733
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.733
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.804
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.727
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.727
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.695
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.757
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.688
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.718
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.704
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.703
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.723
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.724
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.721
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.801
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.723
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.726
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.726
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.804
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.703
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.718
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.705
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.696
MDP0000138669 Malus domestica MDP0000138669 I 0.804
MDP0000177547 Malus domestica MDP0000177547 I 0.718
MDP0000157628 Malus domestica MDP0000157628 I 0.713
MDP0000276536 Malus domestica MDP0000276536 I 0.727
MDP0000133476 Malus domestica MDP0000133476 I 0.804
MDP0000525933 Malus domestica MDP0000525933 I 0.708
MDP0000551969 Malus domestica MDP0000551969 I 0.727
MDP0000127123 Malus domestica MDP0000127123 N 0.707
MDP0000316843 Malus domestica MDP0000316843 N 0.691
MDP0000197375 Malus domestica MDP0000197375 I 0.713
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.725
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.733
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.804
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.728
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.711
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.703
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.724
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.731
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.734
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.712
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.772
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.718
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.728
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.694
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.727
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.727
mgf018851m Mimulus guttatus mgf018851m I 0.804
mgf022665m Mimulus guttatus mgf022665m I 0.715
mgf024137m Mimulus guttatus mgf024137m N 0.685
mgf023693m Mimulus guttatus mgf023693m I 0.694
mgf022810m Mimulus guttatus mgf022810m I 0.694
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.773
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.727
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.718
OBART12G17080 Oryza barthii OBART12G17080 I 0.727
OBART07G06690 Oryza barthii OBART07G06690 I 0.718
OB09G23520 Oryza brachyantha OB09G23520 I 0.750
OB07G15030 Oryza brachyantha OB07G15030 I 0.718
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.727
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.718
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.727
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.757
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.718
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.718
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.783
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.727
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.718
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.727
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.785
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.727
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.718
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.783
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.713
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.727
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.785
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.785
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.727
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.718
OS07G0204000 Oryza sativa OS07G0204000 I 0.718
OS12G0582900 Oryza sativa OS12G0582900 I 0.727
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.728
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.728
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.728
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.728
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.728
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.712
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.717
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.795
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.804
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.688
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.722
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.718
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.716
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.700
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.718
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.727
Pm000004 Prunus mume Pm000004 I 0.708
Pm008788 Prunus mume Pm008788 I 0.804
Pm015931 Prunus mume Pm015931 I 0.727
Pm030235 Prunus mume Pm030235 I 0.713
Pm025326 Prunus mume Pm025326 I 0.718
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.804
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.718
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.700
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.727
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.708
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.713
30174.m008961 Ricinus communis 30174.m008961 I 0.800
30084.m000185 Ricinus communis 30084.m000185 I 0.718
29635.m000461 Ricinus communis 29635.m000461 I 0.727
30174.m009031 Ricinus communis 30174.m009031 I 0.731
30068.m002623 Ricinus communis 30068.m002623 I 0.731
29813.m001543 Ricinus communis 29813.m001543 I 0.730
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.692
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.727
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.718
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.718
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.804
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.680
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.680
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.687
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.687
Si024417m.g Setaria italica Si024417m.g I 0.728
Si027288m.g Setaria italica Si027288m.g I 0.737
Si032213m.g Setaria italica Si032213m.g I 0.795
Si033237m.g Setaria italica Si033237m.g I 0.717
Si038848m.g Setaria italica Si038848m.g I 0.727
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.686
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.690
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.688
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.798
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.682
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.727
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.688
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.727
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.690
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.798
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.692
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.727
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.789
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.717
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.727
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.728
TCM_011632 Theobroma cacao TCM_011632 I 0.733
TCM_040015 Theobroma cacao TCM_040015 I 0.718
TCM_005425 Theobroma cacao TCM_005425 I 0.804
TCM_014471 Theobroma cacao TCM_014471 I 0.711
TCM_015579 Theobroma cacao TCM_015579 I 0.733
TCM_018659 Theobroma cacao TCM_018659 I 0.727
TCM_025913 Theobroma cacao TCM_025913 I 0.718
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.727
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.700
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.692
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.684
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.727
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.718
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.727
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.789
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.728