cassava32974.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava32974.m1 T006887_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.690 0.889
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.690 0.889
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava32974.m1 AP2 24 69

Links

Other AP2 family TFs
Other Manihot esculenta TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF023 Arabidopsis thaliana AT1G01250 D 0.690
29742.m001400 Ricinus communis 29742.m001400 I 0.695
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.680
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.684
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.690
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.690
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.682
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.682
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.677
PK15554.1 Cannabis sativa PK15554.1 I 0.682
Pm018354 Prunus mume Pm018354 I 0.682
Ca_17638 Cicer arietinum Ca_17638 I 0.688
Bo5g002600 Brassica oleracea Bo5g002600 I 0.677
Bra032630 Brassica rapa Bra032630 I 0.686
Bra033274 Brassica rapa Bra033274 I 0.677
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.690
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.678
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.701
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.695
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.682
Ca_01325 Cicer arietinum Ca_01325 I 0.695
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.682