cassava35062.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava35062.m1 T006897_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.807 0.960
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.807 0.960
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.804 0.940
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.804 0.940
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.804 0.940
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.804 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.768 0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.768 0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.768 0.880
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.746 0.840
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.746 0.840
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.732 0.800
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.732 0.800
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.732 0.800
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.732 0.800
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.732 0.800
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.732 0.800
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.704 0.760
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.702 0.900
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.702 0.900
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.696 0.820
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN

NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.683 0.900
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN

NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.683 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35062.m1 AP2 67 118

Links

Other AP2 family TFs
Other Manihot esculenta TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.839
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.839
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.833
mgf026642m Mimulus guttatus mgf026642m I 0.833
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.832
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.829
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.829
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.827
PK23332.1 Cannabis sativa PK23332.1 I 0.826
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.826
Cla006315 Citrullus lanatus Cla006315 I 0.825
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.817
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.817
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.814
30147.m014313 Ricinus communis 30147.m014313 I 0.813
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.813
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.811
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.810
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.807
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.807
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.807
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.807
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.807
Bo9g104770 Brassica oleracea Bo9g104770 I 0.807
DREB1D Arabidopsis thaliana AT5G51990 D 0.807
Bra028290 Brassica rapa Bra028290 I 0.807
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.805
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.804
DREB1A Arabidopsis thaliana AT4G25480 D 0.804
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.803
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.803
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.803
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.803
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.803
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.800
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.797
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.797
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.796
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.795
Cla002362 Citrullus lanatus Cla002362 I 0.795
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.791
MDP0000154764 Malus domestica MDP0000154764 I 0.790
mgf017136m Mimulus guttatus mgf017136m I 0.790
MDP0000198054 Malus domestica MDP0000198054 I 0.789
Cla011674 Citrullus lanatus Cla011674 I 0.788
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.788
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.787
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.787
Pm023775 Prunus mume Pm023775 I 0.787
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.786
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.786
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.784
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.783
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.781
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.780
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.779
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.779
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.777
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.775
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.774
mgf019061m Mimulus guttatus mgf019061m I 0.774
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.773
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.773
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.773
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.773
Pm023769 Prunus mume Pm023769 I 0.772
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.772
TCM_016175 Theobroma cacao TCM_016175 I 0.771
DREB1C Arabidopsis thaliana AT4G25470 D 0.768
Pm023772 Prunus mume Pm023772 I 0.765
30190.m011120 Ricinus communis 30190.m011120 I 0.764
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.763
60638.m00016 Ricinus communis 60638.m00016 I 0.760
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.759
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.759
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.756
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.756
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.756
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.755
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.754
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.754
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.754
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.753
30190.m011119 Ricinus communis 30190.m011119 I 0.753
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.753
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.751
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.751
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.751
mgf026339m Mimulus guttatus mgf026339m I 0.748
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.747
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.747
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.746
OBART02G27760 Oryza barthii OBART02G27760 I 0.746
DREB1G Oryza indica BGIOSGA008804 I 0.746
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.746
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.746
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.746
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.746
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.746
DREB1G Oryza sativa OS02G0677300 D 0.746
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.746
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.746
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.746
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.746
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.745
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.745
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.745
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.742
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.740
Bo01335s010 Brassica oleracea Bo01335s010 I 0.739
Bra016763 Brassica rapa Bra016763 I 0.739
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.738
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.738
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.738
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.736
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.736
Si018262m.g Setaria italica Si018262m.g I 0.736
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.735
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.735
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.734
Pm019386 Prunus mume Pm019386 I 0.734
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.734
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.733
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.733
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.733
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.733
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.733
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.733
DREB1F Arabidopsis thaliana AT1G12610 D 0.732
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.732
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.732
Bo8g108050 Brassica oleracea Bo8g108050 I 0.730
Bra026963 Brassica rapa Bra026963 I 0.730
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.729
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.729
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.729
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.729
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.729
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.729
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.726
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.725
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.725
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.725
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.724
Ca_04504 Cicer arietinum Ca_04504 I 0.724
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.724
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.723
mgf016974m Mimulus guttatus mgf016974m I 0.723
mgf022408m Mimulus guttatus mgf022408m I 0.723
mgf018934m Mimulus guttatus mgf018934m I 0.723
mgf018631m Mimulus guttatus mgf018631m I 0.723
Ca_18948 Cicer arietinum Ca_18948 I 0.723
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.722
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.722
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.721
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.720
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.719
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.719
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.718
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.716
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.714
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.712
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.712
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.711
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.708
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.708
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.707
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.706
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.706
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.704
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.704
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.704
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.704
Bra019162 Brassica rapa Bra019162 I 0.702
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.702
Bo7g110320 Brassica oleracea Bo7g110320 I 0.702
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.702
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.702
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.702
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.702
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.701
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.700
Bra022770 Brassica rapa Bra022770 I 0.699
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.699
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.698
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.697
Ca_08732 Cicer arietinum Ca_08732 I 0.697
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.697
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.696
DREB1E Oryza indica BGIOSGA016950 I 0.696
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.696
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.696
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.696
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.696
OBART04G22220 Oryza barthii OBART04G22220 I 0.696
DREB1E Oryza sativa OS04G0572400 D 0.696
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.696
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.696
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.695
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.694
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.694
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.694
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.693
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.691
Bo5g016750 Brassica oleracea Bo5g016750 I 0.690
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.690
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.689
Bra019777 Brassica rapa Bra019777 I 0.689
Bra010460 Brassica rapa Bra010460 I 0.688
Bo8g050800 Brassica oleracea Bo8g050800 I 0.688
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.688
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.687
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.685
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.685
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.685
Si011005m.g Setaria italica Si011005m.g I 0.685
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.685
DREB1B Arabidopsis thaliana AT4G25490 D 0.683
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.683
Ca_00768 Cicer arietinum Ca_00768 N 0.683
mgf017477m Mimulus guttatus mgf017477m N 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.677