cassava35757.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava35757.valid.m1 T006899_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.710 0.776
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.710 0.776
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.710 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35757.valid.m1 AP2 125 176

Links

Other AP2 family TFs
Other Manihot esculenta TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.813
27524.m000298 Ricinus communis 27524.m000298 I 0.805
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.805
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.786
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.786
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.778
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.778
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.714
TCM_011811 Theobroma cacao TCM_011811 I 0.714
ERF118 Arabidopsis thaliana AT1G68550 D 0.710
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.701
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.692
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.692
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.692
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.692
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.688
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.686
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.681
Cla008128 Citrullus lanatus Cla008128 I 0.681
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.680
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.679