cassava38416.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava38416.m1 T006909_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.677 0.725
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.677 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava38416.m1 AP2 151 202

Links

Other AP2 family TFs
Other Manihot esculenta TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.874
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.874
27446.m000475 Ricinus communis 27446.m000475 I 0.874
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.867
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.865
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.861
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.859
Cla015583 Citrullus lanatus Cla015583 I 0.859
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.857
MDP0000264187 Malus domestica MDP0000264187 I 0.857
mgf023662m Mimulus guttatus mgf023662m I 0.857
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.857
Pm013734 Prunus mume Pm013734 I 0.857
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.854
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.854
Ca_20041 Cicer arietinum Ca_20041 I 0.854
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.854
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.854
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.851
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.851
TCM_027348 Theobroma cacao TCM_027348 I 0.851
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.849
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.849
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.842
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.837
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.837
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.830
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.830
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.830
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.830
ERF084 Arabidopsis thaliana AT1G80580 N 0.830
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.826
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.826
Bra008460 Brassica rapa Bra008460 N 0.819
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.818
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.818
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.818
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.818
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.805
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.801
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.799
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.798
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.791
Bo2g095830 Brassica oleracea Bo2g095830 N 0.778
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.771
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.770
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.761
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.760
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.758
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.725
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.724
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.716
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.710
OS05G0316800 Oryza sativa OS05G0316800 N 0.708
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.708
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.708
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.708
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.708
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.704
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.703
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.700
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.700
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.695
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.691
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.691
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.691
Ca_20544 Cicer arietinum Ca_20544 I 0.691
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.690
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.690
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.690
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.690
TCM_031608 Theobroma cacao TCM_031608 I 0.689
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.689
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.689
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.689
Cla020000 Citrullus lanatus Cla020000 I 0.689
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.689
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.689
27904.m000217 Ricinus communis 27904.m000217 I 0.689
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.689
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.689
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.688
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.688
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I 0.687
Ca_22534 Cicer arietinum Ca_22534 I 0.687
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.686
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.686
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.686
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.686
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.686
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.686
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.686
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.686
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.686
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.686
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.686
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.686
30190.m011321 Ricinus communis 30190.m011321 I 0.686
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.686
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.685
Si002729m.g Setaria italica Si002729m.g I 0.685
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.685
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.685
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.685
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.685
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.685
OBART01G33870 Oryza barthii OBART01G33870 I 0.685
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.685
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.685
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.685
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.685
OB01G42720 Oryza brachyantha OB01G42720 I 0.685
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.685
OS01G0797600 Oryza sativa OS01G0797600 I 0.685
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.685
LPERR05G17480 Leersia perrieri LPERR05G17480 I 0.684
Bra001588 Brassica rapa Bra001588 I 0.684
ONIVA05G22270 Oryza nivara ONIVA05G22270 I 0.684
OMERI05G19490 Oryza meridionalis OMERI05G19490 I 0.684
BGIOSGA017796 Oryza indica BGIOSGA017796 I 0.684
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I 0.684
OPUNC05G19230 Oryza punctata OPUNC05G19230 I 0.684
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.684
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I 0.684
OS05G0497300 Oryza sativa OS05G0497300 I 0.684
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I 0.684
Bo3g066710 Brassica oleracea Bo3g066710 I 0.684
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.684
OBART05G21580 Oryza barthii OBART05G21580 I 0.684
Si023088m.g Setaria italica Si023088m.g I 0.683
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.683
Pavir.J14354 Panicum virgatum Pavir.J14354 I 0.683
Ca_11261 Cicer arietinum Ca_11261 I 0.683
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.683
Bra001784 Brassica rapa Bra001784 I 0.682
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I 0.682
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I 0.682
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.682
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.682
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.682
Bo3g074840 Brassica oleracea Bo3g074840 I 0.682
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.681
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.681
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I 0.681
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.681
mgf019214m Mimulus guttatus mgf019214m I 0.681
Sb03g037080 Sorghum bicolor Sb03g037080 I 0.681
GLYMA13G30990 Glycine max GLYMA13G30990 I 0.681
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.680
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.680
Cla002268 Citrullus lanatus Cla002268 I 0.680
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.680
Bra006325 Brassica rapa Bra006325 I 0.680
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.680
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.680
Pm011391 Prunus mume Pm011391 I 0.679
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.679
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I 0.679
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I 0.679
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.678
PK02602.1 Cannabis sativa PK02602.1 I 0.678
TCM_029820 Theobroma cacao TCM_029820 I 0.678
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I 0.678
Bo2g122260 Brassica oleracea Bo2g122260 I 0.678
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.678
Bra036016 Brassica rapa Bra036016 I 0.678
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.678
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.678
PK19363.1 Cannabis sativa PK19363.1 D 0.677
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I 0.677
TCM_008162 Theobroma cacao TCM_008162 I 0.677
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I 0.677
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.677