cassava40012.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava40012.m1 T006919_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.710 0.863
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava40012.m1 AP2 5 56

Links

Other AP2 family TFs
Other Manihot esculenta TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.729
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.721
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.721
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.718
29848.m004632 Ricinus communis 29848.m004632 I 0.718
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.718
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.718
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.718
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.718
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.718
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.718
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.718
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.718
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.718
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.718
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.718
MDP0000178263 Malus domestica MDP0000178263 I 0.717
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.717
Pm004616 Prunus mume Pm004616 I 0.717
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.717
TCM_037007 Theobroma cacao TCM_037007 I 0.717
MDP0000287350 Malus domestica MDP0000287350 I 0.717
Ca_01764 Cicer arietinum Ca_01764 I 0.717
Ca_09050 Cicer arietinum Ca_09050 I 0.717
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.715
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.713
Cla012914 Citrullus lanatus Cla012914 I 0.713
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.711
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.711
Bo9g171490 Brassica oleracea Bo9g171490 I 0.710
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.710
SHN2 Arabidopsis thaliana AT5G11190 D 0.710
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.710
Bra008985 Brassica rapa Bra008985 I 0.710
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.710
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.710
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.708
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.704
POPTR_0006s06870 Populus trichocarpa POPTR_0006s06870 I 0.704
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.701
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I 0.698
mgf017744m Mimulus guttatus mgf017744m I 0.694
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.693
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.693
SapurV1A.0198s0340 Salix purpurea SapurV1A.0198s0340 N 0.682