cassava41240.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava41240.m1 T006928_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.784 0.939
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.784 0.939
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.784 0.939
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.726 0.837
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.694 0.816
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN

NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.684 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41240.m1 AP2 40 91

Links

Other AP2 family TFs
Other Manihot esculenta TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27810.m000639 Ricinus communis 27810.m000639 I 0.678
29680.m001737 Ricinus communis 29680.m001737 I 0.721
29729.m002292 Ricinus communis 29729.m002292 I 0.686
30170.m014115 Ricinus communis 30170.m014115 I 0.810
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.681
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.688
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.684
DREB2D Arabidopsis thaliana AT1G75490 D 0.784
DREB2G Arabidopsis thaliana AT5G18450 D 0.726
Bo2g016490 Brassica oleracea Bo2g016490 I 0.706
Bo2g083920 Brassica oleracea Bo2g083920 I 0.775
Bo3g013160 Brassica oleracea Bo3g013160 I 0.692
Bo6g086320 Brassica oleracea Bo6g086320 I 0.771
Bo6g119660 Brassica oleracea Bo6g119660 I 0.784
Bo9g155940 Brassica oleracea Bo9g155940 I 0.726
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.726
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.784
Bra002159 Brassica rapa Bra002159 I 0.726
Bra003752 Brassica rapa Bra003752 I 0.771
Bra006460 Brassica rapa Bra006460 I 0.692
Bra008200 Brassica rapa Bra008200 I 0.775
Bra015840 Brassica rapa Bra015840 I 0.784
Bra023674 Brassica rapa Bra023674 I 0.706
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.718
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.784
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.718
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.784
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.678
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.697
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.724
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.678
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.805
Ca_07264 Cicer arietinum Ca_07264 I 0.678
Ca_10770 Cicer arietinum Ca_10770 I 0.785
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.752
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.810
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.678
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.698
Cla006713 Citrullus lanatus Cla006713 I 0.690
Cla021113 Citrullus lanatus Cla021113 I 0.798
Cla022803 Citrullus lanatus Cla022803 I 0.744
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.691
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.744
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.798
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.692
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.749
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.717
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.690
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.719
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.680
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.806
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.688
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.784
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.784
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.741
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.678
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.678
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.785
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.785
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.790
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.790
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.678
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.802
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.731
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.802
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.765
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.693
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.693
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.686
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.706
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.686
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.720
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.689
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.701
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.785
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.685
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.773
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.752
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.680
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.680
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.701
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.680
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.773
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.680
MDP0000141335 Malus domestica MDP0000141335 I 0.771
MDP0000153866 Malus domestica MDP0000153866 I 0.682
MDP0000223609 Malus domestica MDP0000223609 I 0.703
MDP0000250924 Malus domestica MDP0000250924 I 0.786
MDP0000250927 Malus domestica MDP0000250927 I 0.754
MDP0000295902 Malus domestica MDP0000295902 I 0.771
mgf017629m Mimulus guttatus mgf017629m I 0.734
mgf024545m Mimulus guttatus mgf024545m I 0.799
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.785
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.715
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.696
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.678
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.810
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.678
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.687
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.708
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.678
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.715
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.727
PK07402.1 Cannabis sativa PK07402.1 D 0.694
PK08602.1 Cannabis sativa PK08602.1 D 0.684
Pm003634 Prunus mume Pm003634 I 0.727
Pm006274 Prunus mume Pm006274 I 0.798
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.809
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.803
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.686
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.695
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.706
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.678
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.794
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.730
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.678
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.680
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.782
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.708
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.708
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.702
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.685
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.683
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.726
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.679
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.692
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.692
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.679
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.727
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.708
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.715
TCM_024756 Theobroma cacao TCM_024756 I 0.678
TCM_026121 Theobroma cacao TCM_026121 I 0.701
TCM_034132 Theobroma cacao TCM_034132 I 0.792
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.726
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.683
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.784
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.682
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.678
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.685
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.793