cassava41265.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava41265.m1 T006929_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
abi4
M02648_2.00
Zea mays
CGSYGCYBYB

VRVRGCRSCG
SELEX
Mathelier et al.(2014)
MA0123.1
0.793 0.920
abi4
M09706_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABI4_01
0.793 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41265.m1 AP2 67 118

Links

Other AP2 family TFs
Other Manihot esculenta TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.732
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.802
ABI4 Arabidopsis thaliana AT2G40220 I 0.802
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.802
Bo3g034810 Brassica oleracea Bo3g034810 I 0.805
Bo4g025410 Brassica oleracea Bo4g025410 I 0.805
Bra004978 Brassica rapa Bra004978 I 0.805
Bra000178 Brassica rapa Bra000178 I 0.805
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.802
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.802
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.757
Ca_12465 Cicer arietinum Ca_12465 I 0.802
Cla006708 Citrullus lanatus Cla006708 I 0.808
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.818
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.818
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.805
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.818
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.818
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.818
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.756
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.793
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.802
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.802
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.808
MDP0000225376 Malus domestica MDP0000225376 I 0.818
MDP0000628484 Malus domestica MDP0000628484 I 0.808
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.808
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.804
mgf024416m Mimulus guttatus mgf024416m I 0.815
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.790
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.790
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.793
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.793
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.793
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.793
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.793
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.793
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.793
ABI4 Oryza sativa OS05G0351200 I 0.793
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.793
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.793
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.793
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.805
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.818
Pm018953 Prunus mume Pm018953 I 0.818
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.818
29814.m000739 Ricinus communis 29814.m000739 I 0.818
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.818
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.800
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.725
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I 0.725
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.818
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.818
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.793
TCM_042471 Theobroma cacao TCM_042471 I 0.818
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.809
abi4 Zea mays GRMZM2G093595 D 0.793