cassava43172.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava43172.valid.m1 T006940_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.772 0.900
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.772 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43172.valid.m1 AP2 21 72

Links

Other AP2 family TFs
Other Manihot esculenta TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.813
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.809
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.805
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.804
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.803
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.802
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.798
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.798
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.798
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.798
Pm004269 Prunus mume Pm004269 I 0.798
Cla012665 Citrullus lanatus Cla012665 I 0.797
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.794
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.790
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.790
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.789
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.789
28118.m000034 Ricinus communis 28118.m000034 I 0.789
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.789
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.789
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.789
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.788
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.787
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.786
TCM_036269 Theobroma cacao TCM_036269 I 0.784
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.783
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.782
MDP0000283350 Malus domestica MDP0000283350 I 0.779
TCM_036270 Theobroma cacao TCM_036270 I 0.773
ERF021 Arabidopsis thaliana AT1G71450 D 0.772
Bo2g072910 Brassica oleracea Bo2g072910 I 0.772
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.772
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.772
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.772
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.769
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.767
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.765
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.763
Bra016136 Brassica rapa Bra016136 I 0.763
Bo8g027240 Brassica oleracea Bo8g027240 I 0.760
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.759
Bra007975 Brassica rapa Bra007975 I 0.757
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.757
Bo6g113020 Brassica oleracea Bo6g113020 I 0.755
Bra010210 Brassica rapa Bra010210 I 0.755
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.755
ERF022 Arabidopsis thaliana AT1G33760 I 0.754
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.750
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.748
Pm004272 Prunus mume Pm004272 I 0.745
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.744
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.742
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.742
Cla012661 Citrullus lanatus Cla012661 I 0.742
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.741
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.741
27805.m000021 Ricinus communis 27805.m000021 I 0.740
Bo5g086680 Brassica oleracea Bo5g086680 I 0.739
Si026882m.g Setaria italica Si026882m.g I 0.736
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.736
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.735
Bra028009 Brassica rapa Bra028009 I 0.734
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.734
MDP0000122739 Malus domestica MDP0000122739 I 0.732
Bra003924 Brassica rapa Bra003924 I 0.732
Bo6g094210 Brassica oleracea Bo6g094210 I 0.732
MDP0000122740 Malus domestica MDP0000122740 I 0.732
MDP0000151428 Malus domestica MDP0000151428 I 0.732
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.728
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.728
Bo6g046850 Brassica oleracea Bo6g046850 I 0.728
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.726
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.726
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.726
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.726
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.725
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.724
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.724
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.724
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.724
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.723
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.719
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.716
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.716
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.716
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.716
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.716
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.716
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.716
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.716
OS11G0242300 Oryza sativa OS11G0242300 I 0.716
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.716
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.716
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.716
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.716
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.715
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.715
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.713
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.711
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.711
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.711
OB11G16300 Oryza brachyantha OB11G16300 I 0.711
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.711
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.711
F775_17299 Aegilops tauschii F775_17299 I 0.711
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.711
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.709
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.706
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.704
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.704
SapurV1A.0601s0170 Salix purpurea SapurV1A.0601s0170 N 0.702
Ca_15064 Cicer arietinum Ca_15064 I 0.701
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.699
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.699
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.684
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.683
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.683
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.679