CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava43300.valid.m1
(
Manihot esculenta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
cassava43300.valid.m1
T006942_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.710
0.796
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.710
0.796
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.710
0.796
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava43300.valid.m1
AP2
132
183
KKPVGVRQRKWGKWAAEIRNPVTKVRTWLGTYNTLEEAAQAYEAKKREYDAM
Links
Other
AP2
family TFs
Other
Manihot esculenta
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy