cassava43608.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava43608.valid.m1 T006943_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.758 0.900
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.758 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43608.valid.m1 AP2 34 85

Links

Other AP2 family TFs
Other Manihot esculenta TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.802
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.799
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.797
29742.m001400 Ricinus communis 29742.m001400 I 0.797
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.790
mgf020568m Mimulus guttatus mgf020568m I 0.789
Ca_17638 Cicer arietinum Ca_17638 I 0.786
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.785
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.785
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.785
Pm018354 Prunus mume Pm018354 I 0.785
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.785
PK15554.1 Cannabis sativa PK15554.1 I 0.785
Ca_01325 Cicer arietinum Ca_01325 I 0.784
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.780
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.780
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.775
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.775
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.775
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.772
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.772
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.772
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.772
TCM_005130 Theobroma cacao TCM_005130 I 0.771
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.771
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.765
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.758
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.758
ERF023 Arabidopsis thaliana AT1G01250 D 0.758
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.758
Bra032630 Brassica rapa Bra032630 I 0.755
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.752
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.751
Bra033274 Brassica rapa Bra033274 I 0.745
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.745
Bo5g002600 Brassica oleracea Bo5g002600 I 0.745
Bo8g117810 Brassica oleracea Bo8g117810 I 0.742
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.721
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.692
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.692
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.684
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.680
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.680
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.678
Cla012665 Citrullus lanatus Cla012665 I 0.677
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.677