cassava45031.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava45031.m1 T006947_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.783 0.939
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.783 0.939
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.783 0.939
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.721 0.816
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.692 0.816
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN

NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.679 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava45031.m1 AP2 39 90

Links

Other AP2 family TFs
Other Manihot esculenta TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.805
30170.m014115 Ricinus communis 30170.m014115 I 0.805
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.805
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.805
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.805
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.804
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.804
mgf024545m Mimulus guttatus mgf024545m I 0.803
Cla021113 Citrullus lanatus Cla021113 I 0.797
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.797
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.797
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.797
Pm006274 Prunus mume Pm006274 I 0.797
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.796
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.793
TCM_034132 Theobroma cacao TCM_034132 I 0.793
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.789
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.789
MDP0000250924 Malus domestica MDP0000250924 I 0.785
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.784
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.784
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.784
Ca_10770 Cicer arietinum Ca_10770 I 0.784
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.784
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.783
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.783
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.783
DREB2D Arabidopsis thaliana AT1G75490 D 0.783
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.783
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.783
Bo6g119660 Brassica oleracea Bo6g119660 I 0.783
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.783
Bra015840 Brassica rapa Bra015840 I 0.783
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.779
Bo2g083920 Brassica oleracea Bo2g083920 I 0.774
Bra008200 Brassica rapa Bra008200 I 0.774
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.772
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.772
MDP0000141335 Malus domestica MDP0000141335 I 0.770
MDP0000295902 Malus domestica MDP0000295902 I 0.770
Bo6g086320 Brassica oleracea Bo6g086320 I 0.769
Bra003752 Brassica rapa Bra003752 I 0.769
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.760
MDP0000250927 Malus domestica MDP0000250927 I 0.753
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.753
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.751
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.750
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.743
Cla022803 Citrullus lanatus Cla022803 I 0.743
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.740
mgf017629m Mimulus guttatus mgf017629m I 0.731
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.730
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.729
Pm003634 Prunus mume Pm003634 I 0.726
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.725
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.725
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.723
Bo9g155940 Brassica oleracea Bo9g155940 I 0.721
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.721
DREB2G Arabidopsis thaliana AT5G18450 D 0.721
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.721
Bra002159 Brassica rapa Bra002159 I 0.721
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.721
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.720
29680.m001737 Ricinus communis 29680.m001737 I 0.720
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.718
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.717
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.717
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.715
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.714
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.714
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.714
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.711
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.711
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.706
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.706
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.704
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.703
Bo2g016490 Brassica oleracea Bo2g016490 I 0.701
MDP0000223609 Malus domestica MDP0000223609 I 0.701
Bra023674 Brassica rapa Bra023674 I 0.701
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.700
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.700
TCM_026121 Theobroma cacao TCM_026121 I 0.699
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.699
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.697
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.696
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.696
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.695
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.694
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
PK07402.1 Cannabis sativa PK07402.1 D 0.692
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.690
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.690
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.690
29729.m002292 Ricinus communis 29729.m002292 I 0.690
Cla006713 Citrullus lanatus Cla006713 I 0.689
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.688
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.687
Bra006460 Brassica rapa Bra006460 I 0.687
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.687
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.687
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.687
Bo3g013160 Brassica oleracea Bo3g013160 I 0.687
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.687
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.685
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.685
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.685
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.684
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.683
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.682
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.682
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.682
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.681
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.681
MDP0000153866 Malus domestica MDP0000153866 I 0.681
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.679
PK08602.1 Cannabis sativa PK08602.1 D 0.679
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.679
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.679
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.677
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.677