cassava45911.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava45911.m1 T006952_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.685 0.780
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.685 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava45911.m1 AP2 14 65

Links

Other AP2 family TFs
Other Manihot esculenta TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.800
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.800
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.800
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.800
27805.m000021 Ricinus communis 27805.m000021 I 0.778
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.776
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.776
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.775
Bra010210 Brassica rapa Bra010210 I 0.763
TCM_036270 Theobroma cacao TCM_036270 I 0.762
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.760
Bo5g086680 Brassica oleracea Bo5g086680 I 0.760
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.759
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.757
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.756
Cla012661 Citrullus lanatus Cla012661 I 0.756
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.747
Pm004272 Prunus mume Pm004272 I 0.745
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.744
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.744
MDP0000122739 Malus domestica MDP0000122739 I 0.743
MDP0000122740 Malus domestica MDP0000122740 I 0.743
MDP0000151428 Malus domestica MDP0000151428 I 0.743
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.742
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.741
TCM_036269 Theobroma cacao TCM_036269 I 0.741
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.739
ERF022 Arabidopsis thaliana AT1G33760 I 0.737
Bo8g027240 Brassica oleracea Bo8g027240 I 0.732
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.729
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.728
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.728
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.726
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.725
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.722
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.722
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.720
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.718
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.718
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.718
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.718
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.715
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.714
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.714
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.713
Pm004269 Prunus mume Pm004269 I 0.713
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.713
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.713
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.713
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.713
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.713
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.713
Cla012665 Citrullus lanatus Cla012665 I 0.712
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.711
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.711
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.710
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.710
Si026882m.g Setaria italica Si026882m.g I 0.708
MDP0000283350 Malus domestica MDP0000283350 I 0.707
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.707
Bra028009 Brassica rapa Bra028009 I 0.706
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.706
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.705
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.705
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.704
28118.m000034 Ricinus communis 28118.m000034 I 0.702
Bo6g046850 Brassica oleracea Bo6g046850 I 0.700
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.699
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.697
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.696
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.690
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.690
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.688
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.688
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.688
OB11G16300 Oryza brachyantha OB11G16300 I 0.688
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.688
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.688
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.688
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.688
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.688
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.688
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.688
F775_17299 Aegilops tauschii F775_17299 I 0.688
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.688
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.688
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.688
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.688
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.688
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.688
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.688
OS11G0242300 Oryza sativa OS11G0242300 I 0.688
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.687
ERF021 Arabidopsis thaliana AT1G71450 D 0.685
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.685
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.685
Bo2g072910 Brassica oleracea Bo2g072910 I 0.685
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.685
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.683
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.682
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.682
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.681
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.678
Bra016136 Brassica rapa Bra016136 I 0.678
Bo6g113020 Brassica oleracea Bo6g113020 I 0.678