cassava8552.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava8552.m1 T006975_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.794 0.940
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.794 0.940
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8552.m1 AP2 13 64

Links

Other AP2 family TFs
Other Manihot esculenta TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.820
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.820
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.820
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.815
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.814
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.813
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.809
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.803
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.800
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.800
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.798
Pm004269 Prunus mume Pm004269 I 0.798
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.798
Cla012665 Citrullus lanatus Cla012665 I 0.796
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.794
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.794
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.794
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.794
ERF021 Arabidopsis thaliana AT1G71450 D 0.794
Bo2g072910 Brassica oleracea Bo2g072910 I 0.794
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.791
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.789
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.789
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.789
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.789
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.789
28118.m000034 Ricinus communis 28118.m000034 I 0.788
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.787
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.785
Bra016136 Brassica rapa Bra016136 I 0.785
TCM_036269 Theobroma cacao TCM_036269 I 0.784
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.782
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.781
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.779
MDP0000283350 Malus domestica MDP0000283350 I 0.779
Bra007975 Brassica rapa Bra007975 I 0.779
Bo6g113020 Brassica oleracea Bo6g113020 I 0.777
TCM_036270 Theobroma cacao TCM_036270 I 0.773
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.766
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.763
Bo8g027240 Brassica oleracea Bo8g027240 I 0.759
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.756
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.755
ERF022 Arabidopsis thaliana AT1G33760 I 0.754
Bra003924 Brassica rapa Bra003924 I 0.754
Bra010210 Brassica rapa Bra010210 I 0.754
Bo6g094210 Brassica oleracea Bo6g094210 I 0.754
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.750
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.750
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.749
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.748
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.746
Pm004272 Prunus mume Pm004272 I 0.744
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.744
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.742
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.741
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.740
27805.m000021 Ricinus communis 27805.m000021 I 0.740
Bo5g086680 Brassica oleracea Bo5g086680 I 0.739
Si026882m.g Setaria italica Si026882m.g I 0.736
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.736
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.735
Cla012661 Citrullus lanatus Cla012661 I 0.735
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.734
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.734
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.733
Bra028009 Brassica rapa Bra028009 I 0.733
MDP0000122739 Malus domestica MDP0000122739 I 0.732
MDP0000122740 Malus domestica MDP0000122740 I 0.732
MDP0000151428 Malus domestica MDP0000151428 I 0.732
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.728
Bo6g046850 Brassica oleracea Bo6g046850 I 0.727
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.726
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.726
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.725
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.725
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.723
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.723
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.723
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.723
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.721
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.721
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.719
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.716
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.716
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.716
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.716
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.716
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.716
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.716
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.716
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.716
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.716
OS11G0242300 Oryza sativa OS11G0242300 I 0.716
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.716
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.716
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.715
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.714
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.713
Ca_15064 Cicer arietinum Ca_15064 I 0.711
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.710
OB11G16300 Oryza brachyantha OB11G16300 I 0.710
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.710
F775_17299 Aegilops tauschii F775_17299 I 0.710
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.710
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.710
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.710
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.708
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.708
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.706
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.704
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.699
SapurV1A.0601s0170 Salix purpurea SapurV1A.0601s0170 N 0.698
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.697
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.684
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.683
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.682
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.679