cassava9153.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava9153.m1 T006978_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.801 0.960
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.800 0.920
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.800 0.920
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.799 0.900
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.799 0.900
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.791 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.791 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.791 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.791 0.940
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.772 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.772 0.920
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.759 0.920
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.759 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9153.m1 AP2 17 68

Links

Other AP2 family TFs
Other Manihot esculenta TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.718
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.823
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.821
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.772
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.801
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.799
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.757
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.800
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.801
ERF010 Arabidopsis thaliana AT5G67190 D 0.800
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.772
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.801
ERF011 Arabidopsis thaliana AT3G50260 D 0.799
ERF008 Arabidopsis thaliana AT2G23340 D 0.791
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.759
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.800
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.800
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.801
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.735
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.762
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.801
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.764
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.780
Bo7g118430 Brassica oleracea Bo7g118430 I 0.801
Bo9g020380 Brassica oleracea Bo9g020380 I 0.794
Bo7g063980 Brassica oleracea Bo7g063980 I 0.800
Bo4g151460 Brassica oleracea Bo4g151460 I 0.801
Bo1g004940 Brassica oleracea Bo1g004940 I 0.791
Bo8g079660 Brassica oleracea Bo8g079660 I 0.800
Bra011744 Brassica rapa Bra011744 I 0.766
Bra012140 Brassica rapa Bra012140 I 0.779
Bra014056 Brassica rapa Bra014056 I 0.811
Bra017811 Brassica rapa Bra017811 I 0.801
Bra032173 Brassica rapa Bra032173 I 0.801
Bra036061 Brassica rapa Bra036061 I 0.800
Bra037124 Brassica rapa Bra037124 I 0.794
PK15612.1 Cannabis sativa PK15612.1 I 0.804
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.800
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.800
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.801
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.801
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.799
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.801
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.800
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.799
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.801
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.800
Ca_01556 Cicer arietinum Ca_01556 I 0.758
Ca_02170 Cicer arietinum Ca_02170 I 0.786
Cla022937 Citrullus lanatus Cla022937 I 0.809
Cla014175 Citrullus lanatus Cla014175 I 0.766
Cla020961 Citrullus lanatus Cla020961 I 0.811
Cla020550 Citrullus lanatus Cla020550 I 0.750
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.812
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.805
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.805
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.812
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.750
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.811
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.766
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.809
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.813
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.811
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.812
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.811
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.801
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.763
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.800
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.759
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.805
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.813
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.807
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.784
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.799
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.783
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.799
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.784
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.811
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.770
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.812
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.811
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.798
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.812
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.798
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.765
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.764
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.780
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.761
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.821
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.823
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.761
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.784
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.789
MDP0000125673 Malus domestica MDP0000125673 I 0.813
MDP0000179962 Malus domestica MDP0000179962 I 0.813
MDP0000756341 Malus domestica MDP0000756341 I 0.782
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.787
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.823
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.803
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.786
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.758
mgf000289m Mimulus guttatus mgf000289m I 0.806
mgf025363m Mimulus guttatus mgf025363m I 0.794
mgf021115m Mimulus guttatus mgf021115m I 0.803
mgf006561m Mimulus guttatus mgf006561m I 0.797
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.795
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.750
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.748
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.750
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.738
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.806
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.783
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.790
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.807
OBART06G04460 Oryza barthii OBART06G04460 I 0.780
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.764
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.780
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.780
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.764
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.764
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.780
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.764
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.764
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.780
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.764
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.780
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.780
OS04G0648900 Oryza sativa OS04G0648900 I 0.764
OS06G0166400 Oryza sativa OS06G0166400 I 0.780
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.780
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.764
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.764
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.780
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.823
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.787
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.787
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.823
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.815
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.786
30170.m013843 Ricinus communis 30170.m013843 I 0.823
28718.m000038 Ricinus communis 28718.m000038 I 0.811
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.821
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.823
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.787
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.772
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.772
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.823
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.806
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.802
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.806
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.767
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.780
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.764
TCM_033791 Theobroma cacao TCM_033791 I 0.813
TCM_000669 Theobroma cacao TCM_000669 I 0.812
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.765
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.772
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.777
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.764
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.747
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.747
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.764