Cucsa.166340 (Cucumis sativus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cucsa.166340 T007047_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.776 0.940
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.776 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.765 0.940
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.765 0.940
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.765 0.940
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.758 0.940
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.758 0.940
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.758 0.940
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.758 0.940
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.742 0.900
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.742 0.900
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.684 0.780
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.684 0.780
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.680 0.800
Q8W242_BRANA
M09747_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF_01
0.677 0.900
Q8S2T2_BRANA
M09744_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF17_01
0.677 0.900
A6N8P3_BRANA
M09738_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBI5_01
0.677 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.166340.1 AP2 42 93

Links

Other AP2 family TFs
Other Cucumis sativus TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.742
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.677
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.742
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.677
DREB1G Oryza sativa OS02G0677300 D 0.684
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.677
DREB1E Oryza sativa OS04G0572400 D 0.680
DREB1D Arabidopsis thaliana AT5G51990 D 0.776
DREB1A Arabidopsis thaliana AT4G25480 D 0.758
DREB1C Arabidopsis thaliana AT4G25470 D 0.765
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.757
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.780
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.776
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.757
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.783
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.757
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.776
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.757
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.721
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.776
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.720
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.709
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.713
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.756
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.746
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.752
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.756
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.711
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.713
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.774
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.729
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.773
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.773
60638.m00016 Ricinus communis 60638.m00016 I 0.700
30190.m011120 Ricinus communis 30190.m011120 I 0.727
30190.m011119 Ricinus communis 30190.m011119 I 0.687
Pm023775 Prunus mume Pm023775 I 0.721
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.740
mgf016974m Mimulus guttatus mgf016974m I 0.765
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.720
mgf026642m Mimulus guttatus mgf026642m I 0.781
mgf026339m Mimulus guttatus mgf026339m I 0.707
mgf022408m Mimulus guttatus mgf022408m I 0.765
mgf019061m Mimulus guttatus mgf019061m I 0.712
mgf018934m Mimulus guttatus mgf018934m I 0.765
mgf018631m Mimulus guttatus mgf018631m I 0.765
mgf017136m Mimulus guttatus mgf017136m I 0.728
30147.m014313 Ricinus communis 30147.m014313 I 0.747
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.722
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.756
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.684
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.684
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.768
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.720
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.738
MDP0000198054 Malus domestica MDP0000198054 I 0.723
MDP0000154764 Malus domestica MDP0000154764 I 0.724
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.693
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.708
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.751
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.735
PK23332.1 Cannabis sativa PK23332.1 I 0.788
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.783
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.776
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.751
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.708
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.718
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.688
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.703
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.703
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.741
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.746
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.759
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.746
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.756
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.750
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.716
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.746
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.788
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.744
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.690
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.721
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.703
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.703
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.703
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.729
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.773
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.734
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.679
OBART04G22220 Oryza barthii OBART04G22220 I 0.680
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.700
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.691
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.728
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.689
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.680
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.684
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.692
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.721
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.710
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.702
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.709
OBART02G27760 Oryza barthii OBART02G27760 I 0.684
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.698
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.723
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.719
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.697
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.719
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.707
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.723
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.684
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.720
Bra010460 Brassica rapa Bra010460 I 0.721
Bo9g104770 Brassica oleracea Bo9g104770 I 0.776
Bo8g050800 Brassica oleracea Bo8g050800 I 0.721
Bo8g050740 Brassica oleracea Bo8g050740 I 0.677
Bo7g110320 Brassica oleracea Bo7g110320 I 0.742
Bo01335s010 Brassica oleracea Bo01335s010 I 0.677
DREB1E Oryza indica BGIOSGA016950 I 0.680
DREB1G Oryza indica BGIOSGA008804 I 0.684
Bra010461 Brassica rapa Bra010461 I 0.677
Bra016763 Brassica rapa Bra016763 I 0.677
Bra019162 Brassica rapa Bra019162 I 0.742
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.707
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.722
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.713
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.764
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.765
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.689
Bra028290 Brassica rapa Bra028290 I 0.776
Bra022770 Brassica rapa Bra022770 I 0.746
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.688
Pm023772 Prunus mume Pm023772 I 0.703
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.779
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.788
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.776
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.684
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.706
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.775
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.711
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.721
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.782
TCM_016175 Theobroma cacao TCM_016175 I 0.726
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.720
Pm023769 Prunus mume Pm023769 I 0.706
Pm019386 Prunus mume Pm019386 I 0.695
Cla011674 Citrullus lanatus Cla011674 I 0.736
Cla006315 Citrullus lanatus Cla006315 I 0.772
Cla002362 Citrullus lanatus Cla002362 I 0.791
Ca_18948 Cicer arietinum Ca_18948 I 0.728
Ca_04504 Cicer arietinum Ca_04504 I 0.707
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.738
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.767
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.773
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.680
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.680
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.684
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.680
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.684
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.680
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.684
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.680
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.684
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.680
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.699
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.688
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.688
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.718
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.729
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.816
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.800
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.796
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.697
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.684