CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.336890
(
Cucumis sativus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cucsa.336890
T007097_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN
NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.791
0.940
DREB2F
M06630_2.00
Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR
Dap-seq
OMalley et al.(2016)
AT3G57600_col_a
0.760
0.880
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.687
0.780
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.336890.1
AP2
36
87
CEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDQAATKLYGP
Links
Other
AP2
family TFs
Other
Cucumis sativus
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy