CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.338170
(
Cucumis sativus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cucsa.338170
T007098_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.338170.1
AP2
73
133
SIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGP
Links
Other
AP2
family TFs
Other
Cucumis sativus
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0914s0005
Capsella grandiflora
Cagra.0914s0005
N
0.932
GLYMA19G31960
Glycine max
GLYMA19G31960
N
0.932
GLYMA03G29240
Glycine max
GLYMA03G29240
N
0.932
Ciclev10005012m.g
Citrus clementina
Ciclev10005012m.g
N
0.932
Eucgr.A02341
Eucalyptus grandis
Eucgr.A02341
N
0.932
evm.TU.supercontig_224.4
Carica papaya
evm.TU.supercontig_224.4
N
0.932
orange1.1g018292m.g
Citrus sinensis
orange1.1g018292m.g
N
0.932
TCM_024554
Theobroma cacao
TCM_024554
N
0.932
Gorai.003G091500
Gossypium raimondii
Gorai.003G091500
N
0.932
fgenesh2_kg.4__2311__AT2G41710.2
Arabidopsis lyrata
fgenesh2_kg.4__2311__AT2G41710.2
N
0.932
Ca_07237
Cicer arietinum
Ca_07237
N
0.932
PK12273.1
Cannabis sativa
PK12273.1
N
0.932
AT2G41710
Arabidopsis thaliana
AT2G41710
N
0.932
Bo4g013420
Brassica oleracea
Bo4g013420
N
0.932
Bra004641
Brassica rapa
Bra004641
N
0.932
SapurV1A.3066s0020
Salix purpurea
SapurV1A.3066s0020
N
0.932
Thhalv10016812m.g
Eutrema salsugineum
Thhalv10016812m.g
N
0.932
Aquca_009_00241
Aquilegia coerulea
Aquca_009_00241
N
0.925
GLYMA02G33090
Glycine max
GLYMA02G33090
N
0.924
ORGLA05G0129100
Oryza glaberrima
ORGLA05G0129100
N
0.923
Pavir.Ca01410
Panicum virgatum
Pavir.Ca01410
N
0.923
Pavir.Cb01456
Panicum virgatum
Pavir.Cb01456
N
0.923
GRMZM2G013657
Zea mays
GRMZM2G013657
N
0.923
Si021952m.g
Setaria italica
Si021952m.g
N
0.923
MLOC_7325
Hordeum vulgare
MLOC_7325
N
0.923
mgf019897m
Mimulus guttatus
mgf019897m
N
0.883
PK18855.1
Cannabis sativa
PK18855.1
N
0.879
PRUPE_ppa006202mg
Prunus persica
PRUPE_ppa006202mg
N
0.872
POPTR_0006s04820
Populus trichocarpa
POPTR_0006s04820
N
0.872
30006.m000282
Ricinus communis
30006.m000282
N
0.872
POPTR_0016s05670
Populus trichocarpa
POPTR_0016s05670
N
0.872
cassava421.valid.m1
Manihot esculenta
cassava421.valid.m1
N
0.872
Lus10040140.g
Linum usitatissimum
Lus10040140.g
N
0.872
MDP0000314518
Malus domestica
MDP0000314518
N
0.872
MTR_7g091390
Medicago truncatula
MTR_7g091390
N
0.872
Bo3g035770
Brassica oleracea
Bo3g035770
N
0.872
Bostr.11568s0008
Boechera stricta
Bostr.11568s0008
N
0.872
VIT_08s0007g08580
Vitis vinifera
VIT_08s0007g08580
N
0.872
Carubv10023272m.g
Capsella rubella
Carubv10023272m.g
N
0.872
gene02470-v1.0-hybrid
Fragaria vesca
gene02470-v1.0-hybrid
N
0.872
Lus10000965.g
Linum usitatissimum
Lus10000965.g
N
0.872
AMTR_s00159p00062070
Amborella trichopoda
AMTR_s00159p00062070
N
0.865
TRIUR3_07433
Triticum urartu
TRIUR3_07433
N
0.864
OLONG_020459
Oryza longistaminata
OLONG_020459
N
0.864
BRADI2G26987
Brachypodium distachyon
BRADI2G26987
N
0.864
ORUFI05G16140
Oryza rufipogon
ORUFI05G16140
N
0.864
OPUNC05G13110
Oryza punctata
OPUNC05G13110
N
0.864
ONIVA05G15390
Oryza nivara
ONIVA05G15390
N
0.864
Sb09g019190
Sorghum bicolor
Sb09g019190
N
0.864
OGLUM05G15890
Oryza glumaepatula
OGLUM05G15890
N
0.864
F775_10869
Aegilops tauschii
F775_10869
N
0.864
OB05G22940
Oryza brachyantha
OB05G22940
N
0.864
LPERR05G11930
Leersia perrieri
LPERR05G11930
N
0.864
BGIOSGA019793
Oryza indica
BGIOSGA019793
N
0.864
OBART05G15060
Oryza barthii
OBART05G15060
N
0.864
OMERI05G13370
Oryza meridionalis
OMERI05G13370
N
0.864
SapurV1A.0037s0030
Salix purpurea
SapurV1A.0037s0030
N
0.842
OGLUM06G03000
Oryza glumaepatula
OGLUM06G03000
N
0.840
mgf017600m
Mimulus guttatus
mgf017600m
N
0.832
Traes_6AS_53FA034C9
Triticum aestivum
Traes_6AS_53FA034C9
N
0.817
LjSGA_012098.1
Lotus japonicus
LjSGA_012098.1
N
0.810
Solyc02g030210.2
Solanum lycopersicum
Solyc02g030210.2
N
0.798
cassava19560.m1
Manihot esculenta
cassava19560.m1
N
0.782
PK15670.1
Cannabis sativa
PK15670.1
N
0.779
GRMZM2G146688
Zea mays
GRMZM2G146688
N
0.771
30170.m013669
Ricinus communis
30170.m013669
N
0.770
Cucsa.353040
Cucumis sativus
Cucsa.353040
I
0.763
PDK_20s1313371g002
Phoenix dactylifera
PDK_20s1313371g002
N
0.752
MDP0000803527
Malus domestica
MDP0000803527
N
0.743
chr3.CM0452.130.nd
Lotus japonicus
chr3.CM0452.130.nd
N
0.733
BGIOSGA023402
Oryza indica
BGIOSGA023402
N
0.728
OLONG_002212
Oryza longistaminata
OLONG_002212
N
0.728
OMERI06G23370
Oryza meridionalis
OMERI06G23370
N
0.728
OBART06G23380
Oryza barthii
OBART06G23380
N
0.728
OB06G31060
Oryza brachyantha
OB06G31060
N
0.728
Cla022214
Citrullus lanatus
Cla022214
N
0.720
evm.TU.supercontig_99.39
Carica papaya
evm.TU.supercontig_99.39
N
0.719
BBM
Vitis vinifera
VIT_04s0023g00950
N
0.719
OB03G42600
Oryza brachyantha
OB03G42600
N
0.705
evm.TU.supercontig_129.70
Carica papaya
evm.TU.supercontig_129.70
N
0.701
Lus10011730.g
Linum usitatissimum
Lus10011730.g
N
0.695
Lus10039650.g
Linum usitatissimum
Lus10039650.g
N
0.695
cassava40681.m1
Manihot esculenta
cassava40681.m1
N
0.677