CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.359390
(
Cucumis sativus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cucsa.359390
T007103_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.692
0.820
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.692
0.820
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.692
0.820
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.690
0.840
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.690
0.840
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.687
0.820
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.687
0.820
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.680
0.800
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.680
0.800
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.359390.1
AP2
33
84
PVFRGVRKRSWGKWVSEIRQPRKNSRIWLGTFPTPEMAARAHDAAALCIKGD
Links
Other
AP2
family TFs
Other
Cucumis sativus
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla015715
Citrullus lanatus
Cla015715
I
0.801
Lus10038270.g
Linum usitatissimum
Lus10038270.g
I
0.762
Lus10025834.g
Linum usitatissimum
Lus10025834.g
I
0.759
evm.TU.supercontig_109.32
Carica papaya
evm.TU.supercontig_109.32
I
0.745
GSMUA_Achr10G27680_001
Musa acuminata
GSMUA_Achr10G27680_001
I
0.741
POPTR_0003s04920
Populus trichocarpa
POPTR_0003s04920
I
0.735
Bra003415
Brassica rapa
Bra003415
I
0.732
Bo6g077080
Brassica oleracea
Bo6g077080
I
0.732
Bra036552
Brassica rapa
Bra036552
I
0.727
Bo9g011210
Brassica oleracea
Bo9g011210
I
0.727
Thhalv10004870m.g
Eutrema salsugineum
Thhalv10004870m.g
I
0.727
Bra007539
Brassica rapa
Bra007539
I
0.723
Thhalv10006200m.g
Eutrema salsugineum
Thhalv10006200m.g
I
0.723
Bo8g095240
Brassica oleracea
Bo8g095240
I
0.723
Solyc05g050830.1
Solanum lycopersicum
Solyc05g050830.1
I
0.722
PGSC0003DMG400007025
Solanum tuberosum
PGSC0003DMG400007025
I
0.722
SapurV1A.0805s0100
Salix purpurea
SapurV1A.0805s0100
I
0.722
Solyc01g090560.2
Solanum lycopersicum
Solyc01g090560.2
I
0.720
PGSC0003DMG400026035
Solanum tuberosum
PGSC0003DMG400026035
I
0.720
PGSC0003DMG400026461
Solanum tuberosum
PGSC0003DMG400026461
I
0.717
Solyc12g044390.1
Solanum lycopersicum
Solyc12g044390.1
I
0.717
Cla012859
Citrullus lanatus
Cla012859
I
0.716
Cucsa.038760
Cucumis sativus
Cucsa.038760
I
0.716
Gorai.001G049800
Gossypium raimondii
Gorai.001G049800
I
0.716
POPTR_0001s18800
Populus trichocarpa
POPTR_0001s18800
I
0.707
TCM_028851
Theobroma cacao
TCM_028851
I
0.706
ORUFI04G22400
Oryza rufipogon
ORUFI04G22400
I
0.703
ORGLA04G0178600
Oryza glaberrima
ORGLA04G0178600
I
0.703
ORGLA02G0228000
Oryza glaberrima
ORGLA02G0228000
I
0.703
OPUNC04G18500
Oryza punctata
OPUNC04G18500
I
0.703
Pavir.Ga01095
Panicum virgatum
Pavir.Ga01095
I
0.703
OS02G0656600
Oryza sativa
OS02G0656600
I
0.703
Sb06g024530
Sorghum bicolor
Sb06g024530
I
0.703
Si010703m.g
Setaria italica
Si010703m.g
I
0.703
OS04G0549700
Oryza sativa
OS04G0549700
I
0.703
PGSC0003DMG400004826
Solanum tuberosum
PGSC0003DMG400004826
I
0.703
OPUNC02G24210
Oryza punctata
OPUNC02G24210
I
0.703
Pavir.J17742
Panicum virgatum
Pavir.J17742
I
0.703
ONIVA04G19040
Oryza nivara
ONIVA04G19040
I
0.703
Traes_2BL_593E1CCC2
Triticum aestivum
Traes_2BL_593E1CCC2
I
0.703
BRADI3G50620
Brachypodium distachyon
BRADI3G50620
I
0.703
BGIOSGA016882
Oryza indica
BGIOSGA016882
I
0.703
Traes_2AL_45E6314EF
Triticum aestivum
Traes_2AL_45E6314EF
I
0.703
OGLUM02G27010
Oryza glumaepatula
OGLUM02G27010
I
0.703
ONIVA02G28960
Oryza nivara
ONIVA02G28960
I
0.703
OMERI04G17260
Oryza meridionalis
OMERI04G17260
I
0.703
OGLUM04G20750
Oryza glumaepatula
OGLUM04G20750
I
0.703
OMERI02G25900
Oryza meridionalis
OMERI02G25900
I
0.703
Gorai.009G050200
Gossypium raimondii
Gorai.009G050200
I
0.701
SELMODRAFT_104978
Selaginella moellendorffii
SELMODRAFT_104978
I
0.700
SELMODRAFT_125385
Selaginella moellendorffii
SELMODRAFT_125385
I
0.700
Bra037041
Brassica rapa
Bra037041
I
0.700
Cla021417
Citrullus lanatus
Cla021417
I
0.700
Bra034535
Brassica rapa
Bra034535
I
0.699
Bo7g115860
Brassica oleracea
Bo7g115860
I
0.699
Thhalv10026204m.g
Eutrema salsugineum
Thhalv10026204m.g
I
0.699
Eucgr.F03062
Eucalyptus grandis
Eucgr.F03062
I
0.699
Bo3g171090
Brassica oleracea
Bo3g171090
I
0.699
SELMODRAFT_71661
Selaginella moellendorffii
SELMODRAFT_71661
I
0.698
SELMODRAFT_71659
Selaginella moellendorffii
SELMODRAFT_71659
I
0.698
mgf022971m
Mimulus guttatus
mgf022971m
I
0.697
Lus10002801.g
Linum usitatissimum
Lus10002801.g
I
0.696
Lus10001601.g
Linum usitatissimum
Lus10001601.g
I
0.696
Cucsa.259750
Cucumis sativus
Cucsa.259750
I
0.696
Ca_14911
Cicer arietinum
Ca_14911
I
0.695
Solyc08g078410.1
Solanum lycopersicum
Solyc08g078410.1
I
0.695
Solyc08g078420.1
Solanum lycopersicum
Solyc08g078420.1
I
0.695
Solyc06g066540.1
Solanum lycopersicum
Solyc06g066540.1
I
0.695
PGSC0003DMG400004825
Solanum tuberosum
PGSC0003DMG400004825
I
0.695
SapurV1A.2848s0020
Salix purpurea
SapurV1A.2848s0020
I
0.694
30146.m003535
Ricinus communis
30146.m003535
I
0.694
SapurV1A.0370s0130
Salix purpurea
SapurV1A.0370s0130
I
0.694
Traes_6DL_901793D6D
Triticum aestivum
Traes_6DL_901793D6D
I
0.693
MLOC_75601
Hordeum vulgare
MLOC_75601
I
0.693
MTR_1g006660
Medicago truncatula
MTR_1g006660
I
0.693
Bostr.7867s1130
Boechera stricta
Bostr.7867s1130
I
0.692
scaffold_700899.1
Arabidopsis lyrata
scaffold_700899.1
I
0.692
Carubv10006567m.g
Capsella rubella
Carubv10006567m.g
I
0.692
ERF043
Arabidopsis thaliana
AT4G32800
D
0.692
Cagra.4093s0009
Capsella grandiflora
Cagra.4093s0009
I
0.692
Bra009862
Brassica rapa
Bra009862
I
0.690
VIT_09s0002g03940
Vitis vinifera
VIT_09s0002g03940
I
0.690
Carubv10002601m.g
Capsella rubella
Carubv10002601m.g
I
0.690
TINY
Arabidopsis thaliana
AT5G25810
D
0.690
Bo7g095710
Brassica oleracea
Bo7g095710
I
0.690
Ciclev10006536m.g
Citrus clementina
Ciclev10006536m.g
I
0.689
30174.m008790
Ricinus communis
30174.m008790
I
0.689
orange1.1g041015m.g
Citrus sinensis
orange1.1g041015m.g
I
0.689
SapurV1A.0033s0230
Salix purpurea
SapurV1A.0033s0230
I
0.688
Cagra.0239s0048
Capsella grandiflora
Cagra.0239s0048
I
0.687
Carubv10023699m.g
Capsella rubella
Carubv10023699m.g
I
0.687
Gorai.009G136500
Gossypium raimondii
Gorai.009G136500
I
0.687
Lus10038607.g
Linum usitatissimum
Lus10038607.g
I
0.687
POPTR_0002s14210
Populus trichocarpa
POPTR_0002s14210
I
0.687
Bostr.29827s0238
Boechera stricta
Bostr.29827s0238
I
0.687
ERF034
Arabidopsis thaliana
AT2G44940
D
0.687
fgenesh2_kg.4__2683__AT2G44940.1
Arabidopsis lyrata
fgenesh2_kg.4__2683__AT2G44940.1
I
0.687
Bostr.25993s0277
Boechera stricta
Bostr.25993s0277
I
0.687
PRUPE_ppa009812mg
Prunus persica
PRUPE_ppa009812mg
I
0.686
Thhalv10001792m.g
Eutrema salsugineum
Thhalv10001792m.g
I
0.686
TCM_005639
Theobroma cacao
TCM_005639
I
0.686
Pm017610
Prunus mume
Pm017610
I
0.686
Aquca_011_00566
Aquilegia coerulea
Aquca_011_00566
I
0.686
cassava19912.m1
Manihot esculenta
cassava19912.m1
I
0.685
cassava19875.m1
Manihot esculenta
cassava19875.m1
I
0.685
Gorai.004G165300
Gossypium raimondii
Gorai.004G165300
I
0.684
Solyc03g120840.1
Solanum lycopersicum
Solyc03g120840.1
I
0.683
MDP0000790788
Malus domestica
MDP0000790788
I
0.682
Bra027177
Brassica rapa
Bra027177
I
0.682
Bo5g126280
Brassica oleracea
Bo5g126280
I
0.682
Bo4g024220
Brassica oleracea
Bo4g024220
I
0.681
Bra040333
Brassica rapa
Bra040333
I
0.681
Bo4g195280
Brassica oleracea
Bo4g195280
I
0.681
Bra004878
Brassica rapa
Bra004878
I
0.681
PGSC0003DMG400002620
Solanum tuberosum
PGSC0003DMG400002620
I
0.681
ORUFI10G19670
Oryza rufipogon
ORUFI10G19670
I
0.681
TCM_014892
Theobroma cacao
TCM_014892
I
0.681
GSMUA_Achr1G04350_001
Musa acuminata
GSMUA_Achr1G04350_001
I
0.680
ERF035
Arabidopsis thaliana
AT3G60490
D
0.680
fgenesh2_kg.5__2513__AT3G60490.1
Arabidopsis lyrata
fgenesh2_kg.5__2513__AT3G60490.1
I
0.680
Carubv10014506m.g
Capsella rubella
Carubv10014506m.g
I
0.679
Cagra.6624s0013
Capsella grandiflora
Cagra.6624s0013
I
0.679
Thhalv10022278m.g
Eutrema salsugineum
Thhalv10022278m.g
I
0.679
scaffold_301905.1
Arabidopsis lyrata
scaffold_301905.1
I
0.679
evm.TU.supercontig_101.39
Carica papaya
evm.TU.supercontig_101.39
I
0.679
Cagra.3527s0003
Capsella grandiflora
Cagra.3527s0003
I
0.678
Carubv10017799m.g
Capsella rubella
Carubv10017799m.g
I
0.678