estExt_fgenesh1_pg.C_4800009 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 estExt_fgenesh1_pg.C_4800009 T007193_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_4800009
M01639_2.00		 Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.783 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01639_2.00 AP2 49 100

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_4800009 AP2 49 100

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.783
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.762
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.757
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.748
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.720
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.717
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.716
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.716
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.693
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.687
Pm018354 Prunus mume Pm018354 I 0.687
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.683
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.683
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.683
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.683
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.683
PK15554.1 Cannabis sativa PK15554.1 I 0.683
TCM_005130 Theobroma cacao TCM_005130 I 0.683
Bra033274 Brassica rapa Bra033274 I 0.682
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.682
Bo5g002600 Brassica oleracea Bo5g002600 I 0.682
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.681
SELMODRAFT_73157 Selaginella moellendorffii SELMODRAFT_73157 I 0.680
SELMODRAFT_73150 Selaginella moellendorffii SELMODRAFT_73150 I 0.680
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.679
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.679
29742.m001400 Ricinus communis 29742.m001400 I 0.679
Bo8g117810 Brassica oleracea Bo8g117810 I 0.678
mgf020568m Mimulus guttatus mgf020568m I 0.678
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.677