gw1.15.199.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.15.199.1 T007266_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.790 0.939
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.748 0.918
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.702 0.898
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.15.199.1 AP2 1 51

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.792
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.790
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.761
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.748
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.745
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.711
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.707
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I 0.704
Pm027339 Prunus mume Pm027339 I 0.704
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.702
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.702
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.694
SELMODRAFT_69413 Selaginella moellendorffii SELMODRAFT_69413 I 0.690
SELMODRAFT_69412 Selaginella moellendorffii SELMODRAFT_69412 I 0.690
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.689
Bra015686 Brassica rapa Bra015686 I 0.688
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.685
MDP0000652413 Malus domestica MDP0000652413 I 0.685
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.685
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.685
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I 0.680
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.680
cassava29917.valid.m1 Manihot esculenta cassava29917.valid.m1 I 0.680
LjSGA_100683.2.1 Lotus japonicus LjSGA_100683.2.1 I 0.680
MDP0000148178 Malus domestica MDP0000148178 I 0.679
PK29340.1 Cannabis sativa PK29340.1 I 0.679
cassava11373.m1 Manihot esculenta cassava11373.m1 I 0.679
POPTR_0018s09270 Populus trichocarpa POPTR_0018s09270 I 0.679
POPTR_0006s17670 Populus trichocarpa POPTR_0006s17670 I 0.679
cassava10514.m1 Manihot esculenta cassava10514.m1 I 0.679
TCM_037811 Theobroma cacao TCM_037811 I 0.679
Ca_17883 Cicer arietinum Ca_17883 I 0.679
MTR_6g088425 Medicago truncatula MTR_6g088425 I 0.679
29912.m005463 Ricinus communis 29912.m005463 I 0.679
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I 0.678
SELMODRAFT_73157 Selaginella moellendorffii SELMODRAFT_73157 I 0.678
SELMODRAFT_73150 Selaginella moellendorffii SELMODRAFT_73150 I 0.678