CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.155.87.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gw1.155.87.1
T007267_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gw1.8.141.1
M01642_2.00
Physcomitrella patens
CACCGACM
KGTCGGTG
PBM
Weirauch et al.(2014)
pTH8456
0.773
0.918
estExt_fgenesh1_pg.C_4800009
M01639_2.00
Physcomitrella patens
MACCGACM
KGTCGGTK
PBM
Weirauch et al.(2014)
pTH8488
0.720
0.878
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.155.87.1
AP2
1
51
RYKGVRKRQWGKWVSEIREPRKRSRIWLGSFPTAEMAARAYDAAVVCLRGP
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy