gw1.480.6.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.480.6.1 T007299_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.804 0.958
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.709 0.875
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.480.6.1 AP2 1 50

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.804
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.804
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.797
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.768
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.753
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.722
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.721
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.721
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.709
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.707
PK25970.1 Cannabis sativa PK25970.1 I 0.703
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.703
Bra023026 Brassica rapa Bra023026 I 0.703
Bo3g028500 Brassica oleracea Bo3g028500 I 0.703
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.702
TCM_015930 Theobroma cacao TCM_015930 I 0.701
Pm023417 Prunus mume Pm023417 I 0.700
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.700
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.700
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.698
Ca_12765 Cicer arietinum Ca_12765 I 0.697
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.695
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.695
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.695
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.695
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.694
28353.m000054 Ricinus communis 28353.m000054 I 0.692
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.690
Bo7g104770 Brassica oleracea Bo7g104770 I 0.677