Bostr.13671s0198 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.13671s0198 T007570_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.744 0.918
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.739 0.939
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.739 0.939
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13671s0198.1.p AP2 13 63

Links

Other AP2 family TFs
Other Boechera stricta TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.761
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.761
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.756
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.753
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.753
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.744
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.741
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.739
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.739
ERF027 Arabidopsis thaliana AT1G12630 D 0.739
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.735
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.735
TCM_016176 Theobroma cacao TCM_016176 I 0.735
Cla011673 Citrullus lanatus Cla011673 I 0.730
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.725
Bo9g036590 Brassica oleracea Bo9g036590 I 0.722
MDP0000189347 Malus domestica MDP0000189347 I 0.719
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.718
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.718
Bra027616 Brassica rapa Bra027616 I 0.718
Bra027615 Brassica rapa Bra027615 I 0.718
30147.m014311 Ricinus communis 30147.m014311 I 0.715
Cla004491 Citrullus lanatus Cla004491 I 0.710
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.706
Bo8g064940 Brassica oleracea Bo8g064940 I 0.702
Bra016761 Brassica rapa Bra016761 I 0.702
Bo9g028820 Brassica oleracea Bo9g028820 I 0.702
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.696
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.696
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.683
MDP0000262710 Malus domestica MDP0000262710 I 0.683