CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.13671s0198
(
Boechera stricta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Bostr.13671s0198
T007570_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.744
0.918
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.739
0.939
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.739
0.939
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.13671s0198.1.p
AP2
13
63
PVYRGIRCRSGKWVSEIREPKKTTRIWLGTYPTAKMAAAAYDVAAMALKGR
Links
Other
AP2
family TFs
Other
Boechera stricta
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy