Bostr.3877s0058 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.3877s0058 T007655_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.783 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.783 0.920
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.733 0.860
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.732 0.820
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.732 0.820
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.731 0.800
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.731 0.800
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.730 0.860
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.730 0.860
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.730 0.860
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.730 0.860
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.678 0.780
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.678 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3877s0058.1.p AP2 34 85

Links

Other AP2 family TFs
Other Boechera stricta TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.783
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.783
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.766
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.766
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.766
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.765
Ca_02170 Cicer arietinum Ca_02170 I 0.764
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.764
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.761
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.754
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.753
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.753
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.753
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.753
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.752
OS06G0166400 Oryza sativa OS06G0166400 I 0.748
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.748
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.748
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.748
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.748
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.748
OBART06G04460 Oryza barthii OBART06G04460 I 0.748
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.748
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.748
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.748
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.748
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.748
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.748
MDP0000125673 Malus domestica MDP0000125673 I 0.745
MDP0000179962 Malus domestica MDP0000179962 I 0.745
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.745
mgf021115m Mimulus guttatus mgf021115m I 0.745
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.744
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.744
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.744
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.744
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.744
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.744
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.744
TCM_000669 Theobroma cacao TCM_000669 I 0.744
28718.m000038 Ricinus communis 28718.m000038 I 0.743
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.743
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.743
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.742
Bra011744 Brassica rapa Bra011744 I 0.742
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.740
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.740
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.739
mgf006561m Mimulus guttatus mgf006561m I 0.739
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.739
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.739
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.739
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.738
OS04G0648900 Oryza sativa OS04G0648900 I 0.738
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.738
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.738
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.738
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.738
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.738
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.738
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.738
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.738
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.738
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.738
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.738
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.738
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.738
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.737
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.737
MDP0000756341 Malus domestica MDP0000756341 I 0.737
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.737
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.735
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.735
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.735
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.735
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.735
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.735
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.735
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.735
30170.m013843 Ricinus communis 30170.m013843 I 0.735
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.735
Cla020961 Citrullus lanatus Cla020961 I 0.734
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.734
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.734
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.734
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.734
Bra014056 Brassica rapa Bra014056 I 0.734
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.734
Bra032173 Brassica rapa Bra032173 I 0.733
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.733
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.733
Bra017811 Brassica rapa Bra017811 I 0.733
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.733
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.733
Bo1g004940 Brassica oleracea Bo1g004940 I 0.733
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.733
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.733
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.733
Bo4g151460 Brassica oleracea Bo4g151460 I 0.733
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.733
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.733
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.733
Bo7g118430 Brassica oleracea Bo7g118430 I 0.733
Bra036061 Brassica rapa Bra036061 I 0.732
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.732
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.732
Bo7g063980 Brassica oleracea Bo7g063980 I 0.732
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.732
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.732
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.732
PK15612.1 Cannabis sativa PK15612.1 I 0.732
TCM_033791 Theobroma cacao TCM_033791 I 0.732
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.732
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.732
Bo8g079660 Brassica oleracea Bo8g079660 I 0.732
ERF010 Arabidopsis thaliana AT5G67190 D 0.732
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.731
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.731
ERF011 Arabidopsis thaliana AT3G50260 D 0.731
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.731
ERF008 Arabidopsis thaliana AT2G23340 D 0.730
Cla014175 Citrullus lanatus Cla014175 I 0.729
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.729
mgf025363m Mimulus guttatus mgf025363m I 0.729
Cla022937 Citrullus lanatus Cla022937 I 0.728
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.728
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.728
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.728
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.727
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.727
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.726
Bo9g020380 Brassica oleracea Bo9g020380 I 0.726
Bra037124 Brassica rapa Bra037124 I 0.726
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.725
Bra012140 Brassica rapa Bra012140 I 0.724
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.723
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.723
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.723
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.723
mgf000289m Mimulus guttatus mgf000289m I 0.723
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.723
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.723
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.722
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.721
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.721
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.721
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.721
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.719
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.717
Cla020550 Citrullus lanatus Cla020550 I 0.716
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.716
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.715
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.715
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.714
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.711
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.710
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.684
Ca_01556 Cicer arietinum Ca_01556 I 0.684
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.683
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.680
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.678